Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   QAD57_RS02210 Genome accession   NZ_CP122947
Coordinates   484575..485126 (-) Length   183 a.a.
NCBI ID   WP_286446109.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS07     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 479575..490126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAD57_RS02190 (QAD57_02190) - 479839..480975 (+) 1137 WP_000462008.1 NAD-binding protein -
  QAD57_RS02195 (QAD57_02195) - 481007..481372 (-) 366 WP_286446106.1 hypothetical protein -
  QAD57_RS02200 (QAD57_02200) - 481455..481928 (-) 474 WP_286446107.1 hypothetical protein -
  QAD57_RS02205 (QAD57_02205) - 482072..484542 (-) 2471 Protein_439 DUF3519 domain-containing protein -
  QAD57_RS02210 (QAD57_02210) ruvA 484575..485126 (-) 552 WP_286446109.1 Holliday junction branch migration protein RuvA Machinery gene
  QAD57_RS02215 (QAD57_02215) - 485152..486996 (-) 1845 WP_286446111.1 FapA family protein -
  QAD57_RS02220 (QAD57_02220) murJ 487089..488549 (+) 1461 WP_286446112.1 murein biosynthesis integral membrane protein MurJ -
  QAD57_RS02225 (QAD57_02225) cysS 488550..489947 (+) 1398 WP_286446113.1 cysteine--tRNA ligase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20204.80 Da        Isoelectric Point: 8.4942

>NTDB_id=744192 QAD57_RS02210 WP_286446109.1 484575..485126(-) (ruvA) [Helicobacter pylori strain BS07]
MIVGLIGVVEKISALEVHIEVQGVVYGVQVSMQTSALLQAGQKARLKILQVIREDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETSPVRNEVFLALESLGFKSAEINKV
LKTLKPHLSTEAAIKEALQQLRS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=744192 QAD57_RS02210 WP_286446109.1 484575..485126(-) (ruvA) [Helicobacter pylori strain BS07]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATCTCTGCTTTAGAAGTGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCAAACTTCTGCTTTGCTTCAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTACAAGTGATTAGAG
AAGATGCGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGTATAGGCAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGCTTTTTCATTCAAG
ATGAAACTAGCCCTGTGCGCAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCCTAAAACCCCATCTCAGCACCGAAGCAGCGATTAAAGAAGCCTTACAACAACTGCGCTCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(139-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Helicobacter pylori 26695

93.443

100

0.934
  ruvA Bacillus subtilis subsp. subtilis str. 168

32.836

100

0.361
  ruvA Streptococcus pneumoniae TIGR4

33.846

100

0.361
  ruvA Streptococcus pneumoniae R6

33.846

100

0.361
  ruvA Streptococcus pneumoniae D39

33.846

100

0.361