Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   QAP07_RS02700 Genome accession   NZ_CP122946
Coordinates   563301..564311 (-) Length   336 a.a.
NCBI ID   WP_000664517.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS31     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 558301..569311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP07_RS02655 (QAP07_02655) - 558426..558800 (-) 375 WP_000772151.1 chemotaxis response regulator CheY -
  QAP07_RS02660 (QAP07_02660) - 559091..559693 (+) 603 WP_000291634.1 outer membrane protein -
  QAP07_RS02670 (QAP07_02670) - 559825..560232 (-) 408 WP_286444945.1 hypothetical protein -
  QAP07_RS02675 (QAP07_02675) - 560235..560477 (-) 243 WP_286444946.1 PP0621 family protein -
  QAP07_RS02680 (QAP07_02680) rsmG 560471..561007 (-) 537 WP_001068804.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  QAP07_RS02685 (QAP07_02685) queA 561004..562041 (-) 1038 WP_286444948.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  QAP07_RS02690 (QAP07_02690) tatC 562042..562764 (-) 723 WP_000461199.1 twin-arginine translocase subunit TatC -
  QAP07_RS02695 (QAP07_02695) tatB 562757..563233 (-) 477 WP_126131327.1 Sec-independent protein translocase protein TatB -
  QAP07_RS02700 (QAP07_02700) ruvB 563301..564311 (-) 1011 WP_000664517.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QAP07_RS02705 (QAP07_02705) panB 564312..565124 (-) 813 WP_286444950.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  QAP07_RS02710 (QAP07_02710) - 565273..565995 (+) 723 WP_050835052.1 hypothetical protein -
  QAP07_RS02715 (QAP07_02715) - 565985..566839 (+) 855 WP_286444952.1 outer membrane beta-barrel protein -
  QAP07_RS02720 (QAP07_02720) - 566848..567792 (+) 945 WP_286444953.1 outer membrane beta-barrel protein -
  QAP07_RS02725 (QAP07_02725) - 567802..569124 (+) 1323 WP_286444954.1 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37297.23 Da        Isoelectric Point: 6.0715

>NTDB_id=744160 QAP07_RS02700 WP_000664517.1 563301..564311(-) (ruvB) [Helicobacter pylori strain BS31]
MKERIVNLETLDFETSQEVSLRPNLWEDYIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNSQTLF

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=744160 QAP07_RS02700 WP_000664517.1 563301..564311(-) (ruvB) [Helicobacter pylori strain BS31]
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAATCTTTGGGA
AGATTACATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCTGGTTTGGGTAAAACTTCAATCAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCTGCTCCCATGATAGAAAAAAGCGGTGATTTGGCCGCCATTTTGACGAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTCAGGCTAG
ATATTATCATAGGCTCAGGCCCAGCGGCTCAAACCATTAAAATTGATTTGCCCCCTTTCACCCTCATCGGCGCTACCACC
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGTTTTAGGATGCAATTTTATAGCCCTAGCGAATT
AGCCCTTATCATCAAAAAAGCCGCCGCCAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAGTTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
GTCTTTGTTGGCTAATGCTCAAGGACGACCGGTGGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTGCTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCACGCGCTTTTAAAAATCCCCACTTTAAACTCTCAAACTTTATTTTAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(256-325)

RuvB AAA lid domain (AAA_lid_4)

(182-255)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Helicobacter pylori 26695

97.321

100

0.973
  ruvB Bacillus subtilis subsp. subtilis str. 168

53.87

96.131

0.518
  ruvB Streptococcus pneumoniae TIGR4

50.774

96.131

0.488
  ruvB Streptococcus pneumoniae R6

50.774

96.131

0.488
  ruvB Streptococcus pneumoniae D39

50.774

96.131

0.488
  ruvB Synechocystis sp. PCC 6803

52.805

90.179

0.476