Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QDX04_RS21040 Genome accession   NZ_CP122868
Coordinates   4333060..4333596 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain ETEC1721     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4328060..4338596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDX04_RS21020 (QDX04_21020) soxR 4329788..4330252 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  QDX04_RS21025 (QDX04_21025) soxS 4330338..4330661 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  QDX04_RS21030 (QDX04_21030) pdeC 4330664..4332250 (-) 1587 WP_282843266.1 c-di-GMP phosphodiesterase PdeC -
  QDX04_RS21035 (QDX04_21035) yjcB 4332680..4332961 (+) 282 WP_001295689.1 YjcB family protein -
  QDX04_RS21040 (QDX04_21040) ssb 4333060..4333596 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  QDX04_RS21045 (QDX04_21045) uvrA 4333850..4336672 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  QDX04_RS21050 (QDX04_21050) yjbR 4336707..4337063 (-) 357 WP_001542581.1 MmcQ/YjbR family DNA-binding protein -
  QDX04_RS21055 (QDX04_21055) yjbQ 4337067..4337483 (-) 417 WP_000270383.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  QDX04_RS21060 (QDX04_21060) aphA 4337594..4338307 (-) 714 WP_001317548.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=743542 QDX04_RS21040 WP_000168305.1 4333060..4333596(-) (ssb) [Escherichia coli strain ETEC1721]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=743542 QDX04_RS21040 WP_000168305.1 4333060..4333596(-) (ssb) [Escherichia coli strain ETEC1721]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489