Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   QDX04_RS10000 Genome accession   NZ_CP122868
Coordinates   2046964..2047974 (+) Length   336 a.a.
NCBI ID   WP_000568519.1    Uniprot ID   Q32HA1
Organism   Escherichia coli strain ETEC1721     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2041964..2052974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDX04_RS09970 (QDX04_09970) nudB 2043688..2044140 (+) 453 WP_001443602.1 dihydroneopterin triphosphate diphosphatase -
  QDX04_RS09975 (QDX04_09975) yebC 2044169..2044909 (+) 741 WP_000907248.1 YebC/PmpR family DNA-binding transcriptional regulator -
  QDX04_RS09980 (QDX04_09980) ruvC 2044944..2045465 (+) 522 WP_001295503.1 crossover junction endodeoxyribonuclease RuvC -
  QDX04_RS09985 (QDX04_09985) yebB 2045467..2046069 (-) 603 WP_001024930.1 YebB family permuted papain-like enzyme -
  QDX04_RS09990 (QDX04_09990) yobI 2046140..2046205 (+) 66 WP_001386853.1 stress response small protein YobI -
  QDX04_RS09995 (QDX04_09995) ruvA 2046344..2046955 (+) 612 WP_000580323.1 Holliday junction branch migration protein RuvA -
  QDX04_RS10000 (QDX04_10000) ruvB 2046964..2047974 (+) 1011 WP_000568519.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QDX04_RS10005 (QDX04_10005) znuB 2048121..2048906 (-) 786 WP_000571479.1 zinc ABC transporter permease subunit ZnuB -
  QDX04_RS10010 (QDX04_10010) znuC 2048903..2049658 (-) 756 WP_000202996.1 zinc ABC transporter ATP-binding protein ZnuC -
  QDX04_RS10015 (QDX04_10015) znuA 2049737..2050669 (+) 933 WP_001342995.1 zinc ABC transporter substrate-binding protein ZnuA -
  QDX04_RS10020 (QDX04_10020) mepM 2050685..2052007 (+) 1323 WP_001184045.1 murein DD-endopeptidase MepM -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37173.77 Da        Isoelectric Point: 4.7818

>NTDB_id=743515 QDX04_RS10000 WP_000568519.1 2046964..2047974(+) (ruvB) [Escherichia coli strain ETEC1721]
MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG
VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG
TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA
TTRAWNHFGITPPEMP

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=743515 QDX04_RS10000 WP_000568519.1 2046964..2047974(+) (ruvB) [Escherichia coli strain ETEC1721]
ATGATTGAAGCAGACCGTCTGATTTCTGCCGGTACCACTTTGCCGGAAGATGTAGCAGATCGCGCCATTCGCCCTAAATT
ACTGGAAGAGTATGTTGGTCAGCCGCAGGTTCGTTCACAGATGGAGATTTTCATCAAAGCAGCGAAACTGCGCGGCGATG
CCCTCGATCATCTGTTGATTTTCGGTCCTCCGGGGTTGGGTAAAACTACGCTTGCCAACATCGTCGCCAATGAAATGGGC
GTTAATTTACGCACGACTTCTGGTCCGGTGCTGGAAAAGGCGGGCGATCTGGCAGCGATGCTCACTAACCTTGAACCGCA
TGACGTGTTGTTTATTGATGAGATCCACCGTCTTTCGCCAGTGGTGGAAGAGGTGTTGTATCCGGCAATGGAAGACTACC
AACTGGATATCATGATTGGTGAAGGTCCGGCGGCACGCTCCATTAAAATTGATTTGCCGCCGTTTACCCTGATTGGTGCA
ACCACGCGCGCAGGTTCGCTGACATCACCGTTGCGCGATCGTTTTGGTATTGTGCAGCGTCTGGAGTTTTATCAGGTGCC
GGATCTGCAATATATCGTCAGTCGCAGCGCACGCTTTATGGGGCTTGAGATGAGTGATGACGGCGCGCTGGAAGTTGCTC
GTCGAGCTCGCGGTACGCCGCGCATTGCCAACCGTCTGCTGCGTCGAGTGCGTGATTTCGCCGAAGTGAAGCACGATGGC
ACCATCTCGGCAGATATCGCTGCTCAGGCGTTGGATATGTTGAATGTCGATGCTGAAGGTTTCGATTATATGGACCGCAA
GTTATTGCTGGCGGTAATCGATAAGTTCTTTGGTGGGCCGGTAGGTCTGGATAACCTTGCGGCAGCCATTGGCGAAGAAC
GTGAAACCATTGAGGATGTGCTGGAACCTTATTTGATTCAGCAAGGCTTTTTGCAGCGTACACCGCGTGGGCGTATGGCG
ACGACGCGGGCGTGGAATCACTTTGGCATAACGCCGCCAGAAATGCCGTAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)

RuvB AAA lid domain (AAA_lid_4)

(184-257)

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HA1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

60.486

97.917

0.592
  ruvB Streptococcus pneumoniae TIGR4

58.934

94.94

0.56
  ruvB Streptococcus pneumoniae R6

58.934

94.94

0.56
  ruvB Streptococcus pneumoniae D39

58.934

94.94

0.56
  ruvB Synechocystis sp. PCC 6803

53.251

96.131

0.512
  ruvB Helicobacter pylori 26695

52.038

94.94

0.494