Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QDY31_RS21225 Genome accession   NZ_CP122859
Coordinates   4312272..4312808 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain ETEC1720     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4307272..4317808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDY31_RS21205 (QDY31_21205) soxR 4309000..4309464 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  QDY31_RS21210 (QDY31_21210) soxS 4309550..4309873 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  QDY31_RS21215 (QDY31_21215) pdeC 4309876..4311462 (-) 1587 Protein_4155 c-di-GMP phosphodiesterase PdeC -
  QDY31_RS21220 (QDY31_21220) yjcB 4311892..4312173 (+) 282 WP_001295689.1 YjcB family protein -
  QDY31_RS21225 (QDY31_21225) ssb 4312272..4312808 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  QDY31_RS21230 (QDY31_21230) uvrA 4313062..4315884 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  QDY31_RS21235 (QDY31_21235) yjbR 4315919..4316275 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  QDY31_RS21240 (QDY31_21240) yjbQ 4316279..4316695 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  QDY31_RS21245 (QDY31_21245) aphA 4316806..4317519 (-) 714 WP_001395166.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=743461 QDY31_RS21225 WP_000168305.1 4312272..4312808(-) (ssb) [Escherichia coli strain ETEC1720]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=743461 QDY31_RS21225 WP_000168305.1 4312272..4312808(-) (ssb) [Escherichia coli strain ETEC1720]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489