Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QDY55_RS25845 Genome accession   NZ_CP122768
Coordinates   5162712..5163248 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain ETEC1738     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5157712..5168248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDY55_RS25825 (QDY55_25820) soxR 5159440..5159904 (-) 465 WP_000412424.1 redox-sensitive transcriptional activator SoxR -
  QDY55_RS25830 (QDY55_25825) soxS 5159990..5160313 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  QDY55_RS25835 (QDY55_25830) pdeC 5160316..5161902 (-) 1587 WP_064225844.1 c-di-GMP phosphodiesterase PdeC -
  QDY55_RS25840 (QDY55_25835) yjcB 5162332..5162613 (+) 282 WP_001295689.1 YjcB family protein -
  QDY55_RS25845 (QDY55_25840) ssb 5162712..5163248 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  QDY55_RS25850 (QDY55_25845) uvrA 5163502..5166324 (+) 2823 WP_282870202.1 excinuclease ABC subunit UvrA Machinery gene
  QDY55_RS25855 (QDY55_25850) yjbR 5166359..5166715 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  QDY55_RS25860 (QDY55_25855) yjbQ 5166719..5167135 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  QDY55_RS25865 (QDY55_25860) aphA 5167246..5167959 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=742957 QDY55_RS25845 WP_000168305.1 5162712..5163248(-) (ssb) [Escherichia coli strain ETEC1738]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=742957 QDY55_RS25845 WP_000168305.1 5162712..5163248(-) (ssb) [Escherichia coli strain ETEC1738]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCTGCT
CCGGCAGCACCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489