Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   OHA70_RS01605 Genome accession   NZ_CP107954
Coordinates   339362..339643 (+) Length   93 a.a.
NCBI ID   WP_328335017.1    Uniprot ID   -
Organism   Kribbella sp. NBC_00382     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 334362..344643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA70_RS01585 (OHA70_01585) - 334574..335779 (-) 1206 WP_328327685.1 type II secretion system F family protein -
  OHA70_RS01590 (OHA70_01590) - 335776..337101 (-) 1326 WP_328327687.1 GspE/PulE family protein -
  OHA70_RS01595 (OHA70_01595) - 337098..338192 (-) 1095 WP_328327689.1 type IV pilus twitching motility protein PilT -
  OHA70_RS01600 (OHA70_01600) - 338452..338889 (-) 438 WP_328327691.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  OHA70_RS01605 (OHA70_01605) pilD 339362..339643 (+) 282 WP_328335017.1 prepilin peptidase Machinery gene
  OHA70_RS01610 (OHA70_01610) - 339707..341518 (-) 1812 WP_328327693.1 helix-turn-helix domain-containing protein -
  OHA70_RS01615 (OHA70_01615) - 341541..342845 (-) 1305 WP_328327695.1 MFS transporter -
  OHA70_RS01620 (OHA70_01620) - 342862..343596 (-) 735 WP_328327697.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10087.11 Da        Isoelectric Point: 11.5632

>NTDB_id=742570 OHA70_RS01605 WP_328335017.1 339362..339643(+) (pilD) [Kribbella sp. NBC_00382]
MIVVLALLLGVAVGSFLNVVIHRVPRHESIVRPASRCPHCGTPIRSRHNLPVVGWLILRGRCADCGTPISVRYPLVELGT
GLLFAALAWLGTR

Nucleotide


Download         Length: 282 bp        

>NTDB_id=742570 OHA70_RS01605 WP_328335017.1 339362..339643(+) (pilD) [Kribbella sp. NBC_00382]
ATGATCGTCGTGCTCGCCCTGCTGCTGGGGGTCGCCGTGGGCTCGTTCCTGAACGTCGTGATCCATCGGGTGCCACGCCA
CGAATCCATCGTCCGGCCGGCCTCACGCTGTCCGCACTGCGGTACTCCGATCCGCTCCCGGCACAACCTCCCGGTCGTCG
GCTGGCTGATCCTGCGCGGCCGCTGCGCGGACTGCGGTACGCCGATCAGCGTCCGGTATCCCCTGGTGGAACTCGGTACC
GGATTACTGTTCGCCGCGCTGGCCTGGCTTGGTACCCGGTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

45.872

100

0.538
  pilD Vibrio cholerae strain A1552

44.231

100

0.495
  pilD Vibrio campbellii strain DS40M4

40.708

100

0.495
  pilD Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

51.136

94.624

0.484
  pilD Acinetobacter baumannii D1279779

42.424

100

0.452
  pilD Acinetobacter nosocomialis M2

42.424

100

0.452
  cclA/cilC Streptococcus mitis SK321

40.449

95.699

0.387
  cclA/cilC Streptococcus pneumoniae Rx1

38.202

95.699

0.366
  cclA/cilC Streptococcus pneumoniae D39

38.202

95.699

0.366
  cclA/cilC Streptococcus pneumoniae R6

38.202

95.699

0.366