Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QDW56_RS22840 Genome accession   NZ_CP122673
Coordinates   4637964..4638500 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain ETEC4071     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4632964..4643500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDW56_RS22820 (QDW56_22820) soxR 4634693..4635157 (-) 465 WP_000412424.1 redox-sensitive transcriptional activator SoxR -
  QDW56_RS22825 (QDW56_22825) soxS 4635243..4635566 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  QDW56_RS22830 (QDW56_22830) pdeC 4635569..4637155 (-) 1587 WP_001550430.1 c-di-GMP phosphodiesterase PdeC -
  QDW56_RS22835 (QDW56_22835) yjcB 4637584..4637865 (+) 282 WP_001295689.1 YjcB family protein -
  QDW56_RS22840 (QDW56_22840) ssb 4637964..4638500 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  QDW56_RS22845 (QDW56_22845) uvrA 4638755..4641577 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  QDW56_RS22850 (QDW56_22850) yjbR 4641612..4641968 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  QDW56_RS22855 (QDW56_22855) yjbQ 4641972..4642388 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  QDW56_RS22860 (QDW56_22860) aphA 4642499..4643212 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=742133 QDW56_RS22840 WP_000168305.1 4637964..4638500(-) (ssb) [Escherichia coli strain ETEC4071]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=742133 QDW56_RS22840 WP_000168305.1 4637964..4638500(-) (ssb) [Escherichia coli strain ETEC4071]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
TGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCTGCT
CCGGCAGCACCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489