Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GL2_RS03925 Genome accession   NZ_AP019807
Coordinates   883776..884387 (-) Length   203 a.a.
NCBI ID   WP_143729398.1    Uniprot ID   A0A510IP95
Organism   Microbulbifer sp. GL-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 878776..889387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GL2_RS03905 (GL2_08010) galU 879907..880755 (-) 849 WP_143729394.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GL2_RS03910 (GL2_08020) fabA 881031..881555 (+) 525 WP_143729395.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -
  GL2_RS03915 (GL2_08030) fabB 881624..882847 (+) 1224 WP_143729396.1 beta-ketoacyl-ACP synthase I -
  GL2_RS03920 (GL2_08040) - 882913..883761 (-) 849 WP_143729397.1 sugar nucleotide-binding protein -
  GL2_RS03925 (GL2_08050) ssb 883776..884387 (-) 612 WP_143729398.1 single-stranded DNA-binding protein Machinery gene
  GL2_RS03930 (GL2_08060) - 884536..885717 (-) 1182 WP_143729399.1 MFS transporter -
  GL2_RS03935 (GL2_08070) - 885808..887214 (-) 1407 WP_143732782.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 21727.79 Da        Isoelectric Point: 5.2957

>NTDB_id=74209 GL2_RS03925 WP_143729398.1 883776..884387(-) (ssb) [Microbulbifer sp. GL-2]
MARGINKVILIGNLGNDPETKYMPSGGAVTNVSLATSESWKDKQTGQQQERTEWHRVVFFNRLAEIAGEYLRKGSKVYIE
GSLRTRKWQDKNSGQDRYTTEIVASEMQMLDGRGEQGGFGQGMGGAGMGAAGMGGQSVGGGQGGYEQQGGFQGGYQQGSQ
DSFAQGRTAPSPMAPSNKQQPQQQPNQGATGGFDNSFDDDIPF

Nucleotide


Download         Length: 612 bp        

>NTDB_id=74209 GL2_RS03925 WP_143729398.1 883776..884387(-) (ssb) [Microbulbifer sp. GL-2]
ATGGCCAGGGGGATCAATAAAGTAATTCTGATCGGTAATCTGGGAAACGATCCGGAAACCAAATATATGCCGAGTGGCGG
TGCTGTCACCAATGTGAGCCTGGCCACGAGTGAGAGCTGGAAGGACAAGCAGACCGGACAGCAGCAGGAGCGAACCGAGT
GGCACCGAGTGGTGTTCTTCAACCGCCTGGCTGAGATTGCCGGTGAGTACTTGCGTAAGGGCTCTAAAGTGTACATTGAG
GGCTCATTGCGCACCCGTAAATGGCAGGACAAGAATAGCGGCCAGGACCGCTACACTACCGAGATTGTTGCCAGTGAAAT
GCAGATGCTCGACGGACGTGGAGAGCAGGGCGGTTTTGGCCAGGGTATGGGTGGTGCTGGAATGGGTGCTGCAGGTATGG
GCGGTCAGTCTGTGGGCGGAGGCCAGGGGGGCTACGAACAGCAGGGTGGTTTCCAGGGAGGCTACCAGCAAGGCAGCCAG
GACTCTTTTGCACAAGGGCGCACAGCCCCATCACCGATGGCGCCATCCAACAAGCAGCAGCCTCAGCAGCAGCCCAACCA
GGGGGCCACTGGAGGCTTCGATAACAGCTTTGACGACGATATTCCCTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A510IP95

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.289

100

0.512
  ssb Glaesserella parasuis strain SC1401

50.5

98.522

0.498
  ssb Neisseria meningitidis MC58

44.828

100

0.448
  ssb Neisseria gonorrhoeae MS11

43.204

100

0.438

Multiple sequence alignment