Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QDW61_RS22705 Genome accession   NZ_CP122652
Coordinates   4614534..4615070 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain ETEC4075     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4609534..4620070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDW61_RS22685 (QDW61_22685) soxR 4611263..4611727 (-) 465 WP_000412424.1 redox-sensitive transcriptional activator SoxR -
  QDW61_RS22690 (QDW61_22690) soxS 4611813..4612136 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  QDW61_RS22695 (QDW61_22695) pdeC 4612139..4613725 (-) 1587 WP_001550430.1 c-di-GMP phosphodiesterase PdeC -
  QDW61_RS22700 (QDW61_22700) yjcB 4614154..4614435 (+) 282 WP_001295689.1 YjcB family protein -
  QDW61_RS22705 (QDW61_22705) ssb 4614534..4615070 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  QDW61_RS22710 (QDW61_22710) uvrA 4615325..4618147 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  QDW61_RS22715 (QDW61_22715) yjbR 4618182..4618538 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  QDW61_RS22720 (QDW61_22720) yjbQ 4618542..4618958 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  QDW61_RS22725 (QDW61_22725) aphA 4619069..4619782 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=741967 QDW61_RS22705 WP_000168305.1 4614534..4615070(-) (ssb) [Escherichia coli strain ETEC4075]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=741967 QDW61_RS22705 WP_000168305.1 4614534..4615070(-) (ssb) [Escherichia coli strain ETEC4075]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
TGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCTGCT
CCGGCAGCACCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489