Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   QDW55_RS10860 Genome accession   NZ_CP122643
Coordinates   2202798..2203808 (+) Length   336 a.a.
NCBI ID   WP_000568522.1    Uniprot ID   Q8FGR3
Organism   Escherichia coli strain ETEC4079     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2197798..2208808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDW55_RS10830 (QDW55_10830) nudB 2199522..2199974 (+) 453 WP_032141314.1 dihydroneopterin triphosphate diphosphatase -
  QDW55_RS10835 (QDW55_10835) yebC 2200003..2200743 (+) 741 WP_000907234.1 YebC/PmpR family DNA-binding transcriptional regulator -
  QDW55_RS10840 (QDW55_10840) ruvC 2200778..2201299 (+) 522 WP_001295503.1 crossover junction endodeoxyribonuclease RuvC -
  QDW55_RS10845 (QDW55_10845) yebB 2201301..2201903 (-) 603 WP_001024929.1 YebB family permuted papain-like enzyme -
  QDW55_RS10850 (QDW55_10850) yobI 2201974..2202039 (+) 66 WP_072093883.1 stress response small protein YobI -
  QDW55_RS10855 (QDW55_10855) ruvA 2202178..2202789 (+) 612 WP_000580323.1 Holliday junction branch migration protein RuvA -
  QDW55_RS10860 (QDW55_10860) ruvB 2202798..2203808 (+) 1011 WP_000568522.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QDW55_RS10865 (QDW55_10865) znuB 2203956..2204741 (-) 786 WP_000571471.1 zinc ABC transporter permease subunit ZnuB -
  QDW55_RS10870 (QDW55_10870) znuC 2204738..2205493 (-) 756 WP_000202996.1 zinc ABC transporter ATP-binding protein ZnuC -
  QDW55_RS10875 (QDW55_10875) znuA 2205572..2206504 (+) 933 WP_001376899.1 zinc ABC transporter substrate-binding protein ZnuA -
  QDW55_RS10880 (QDW55_10880) mepM 2206520..2207842 (+) 1323 WP_052907711.1 murein DD-endopeptidase MepM -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37171.80 Da        Isoelectric Point: 4.7818

>NTDB_id=741779 QDW55_RS10860 WP_000568522.1 2202798..2203808(+) (ruvB) [Escherichia coli strain ETEC4079]
MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG
VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG
TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA
TVRAWNHFGITPPEMP

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=741779 QDW55_RS10860 WP_000568522.1 2202798..2203808(+) (ruvB) [Escherichia coli strain ETEC4079]
ATGATTGAAGCAGACCGTCTGATTTCTGCCGGTACCACTTTGCCGGAAGATGTGGCAGATCGCGCCATTCGCCCTAAATT
ACTGGAAGAGTATGTTGGTCAGCCGCAGGTTCGTTCGCAGATGGAGATTTTCATCAAAGCAGCGAAACTGCGCGGCGATG
CCCTCGATCATCTGTTGATTTTTGGTCCTCCGGGGTTGGGTAAAACTACGCTTGCTAACATTGTCGCCAATGAAATGGGT
GTTAATTTACGTACGACTTCTGGTCCGGTGCTGGAAAAGGCGGGCGATCTGGCAGCGATGCTCACTAACCTTGAACCGCA
TGACGTGCTGTTTATTGATGAGATCCACCGTCTTTCGCCAGTGGTGGAAGAGGTGTTGTATCCGGCAATGGAAGACTACC
AACTGGATATCATGATTGGTGAAGGTCCGGCGGCACGCTCCATTAAAATTGATTTGCCGCCGTTTACCCTGATTGGTGCA
ACCACGCGCGCAGGTTCGCTGACATCACCGTTGCGCGATCGTTTTGGTATTGTGCAGCGTCTGGAGTTTTATCAGGTGCC
GGATCTGCAATATATCGTCAGTCGCAGCGCACGCTTTATGGGGCTTGAGATGAGTGATGACGGCGCGCTGGAAGTTGCTC
GTCGCGCTCGCGGTACGCCACGTATTGCCAACCGTCTGCTGCGTCGAGTGCGTGACTTCGCCGAAGTGAAGCACGATGGC
ACCATCTCGGCTGATATCGCTGCTCAGGCGCTGGATATGCTGAATGTCGATGCCGAAGGTTTCGATTATATGGACCGCAA
ATTGTTGCTGGCGGTAATCGATAAGTTCTTTGGTGGGCCGGTAGGTCTGGATAACCTGGCGGCTGCCATTGGCGAAGAAC
GTGAAACCATTGAGGATGTGCTGGAACCTTATTTGATTCAGCAAGGCTTTTTGCAGCGTACACCGCGCGGGCGTATGGCG
ACAGTGCGGGCGTGGAACCACTTCGGCATCACGCCGCCAGAAATGCCGTAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)

RuvB AAA lid domain (AAA_lid_4)

(184-257)

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FGR3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

60.486

97.917

0.592
  ruvB Streptococcus pneumoniae TIGR4

58.934

94.94

0.56
  ruvB Streptococcus pneumoniae R6

58.934

94.94

0.56
  ruvB Streptococcus pneumoniae D39

58.934

94.94

0.56
  ruvB Synechocystis sp. PCC 6803

52.941

96.131

0.509
  ruvB Helicobacter pylori 26695

52.366

94.345

0.494