Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OF122_RS10430 Genome accession   NZ_CP107716
Coordinates   2089367..2089840 (+) Length   157 a.a.
NCBI ID   WP_264224192.1    Uniprot ID   -
Organism   Pelagibacterium flavum strain YIM 151497     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2084367..2094840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OF122_RS10410 (OF122_10410) - 2084463..2084612 (-) 150 WP_014130631.1 DUF1127 domain-containing protein -
  OF122_RS10415 (OF122_10415) - 2084753..2085403 (+) 651 WP_264224190.1 glutathione S-transferase family protein -
  OF122_RS10420 (OF122_10420) - 2085469..2085618 (-) 150 WP_014130629.1 DUF1127 domain-containing protein -
  OF122_RS10425 (OF122_10425) uvrA 2086157..2089048 (-) 2892 WP_264224191.1 excinuclease ABC subunit UvrA -
  OF122_RS10430 (OF122_10430) ssb 2089367..2089840 (+) 474 WP_264224192.1 single-stranded DNA-binding protein Machinery gene
  OF122_RS10435 (OF122_10435) - 2089885..2090418 (-) 534 WP_264224193.1 hypothetical protein -
  OF122_RS10440 (OF122_10440) - 2090402..2092660 (-) 2259 WP_264224194.1 RND family transporter -
  OF122_RS10445 (OF122_10445) - 2092759..2093193 (-) 435 WP_264224195.1 Lrp/AsnC family transcriptional regulator -
  OF122_RS10450 (OF122_10450) rocF 2093311..2094237 (+) 927 WP_264224196.1 arginase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17240.10 Da        Isoelectric Point: 5.9617

>NTDB_id=741578 OF122_RS10430 WP_264224192.1 2089367..2089840(+) (ssb) [Pelagibacterium flavum strain YIM 151497]
MSGSVNKVILVGNLGADPEVRSLPNGNPVVNLRIATSERWRDRNSGEPREKTEWHRVVIFSEGLAKVAQNYLKKGSKVYI
EGQLQTRKWEKDGQDQYTTEIVLQGFNSTLTMLDGRGEGGGDRDSGGYGGSRQVENRGRPSSAPAFEPGGMDDDIPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=741578 OF122_RS10430 WP_264224192.1 2089367..2089840(+) (ssb) [Pelagibacterium flavum strain YIM 151497]
ATGTCGGGAAGCGTGAACAAGGTTATTCTGGTTGGCAATCTGGGTGCCGACCCCGAGGTGCGGTCGCTACCCAACGGAAA
TCCCGTGGTCAATCTGCGCATCGCGACATCCGAGCGCTGGCGCGACCGCAATTCCGGTGAGCCGCGCGAAAAGACCGAAT
GGCACCGTGTGGTGATCTTCAGCGAGGGACTGGCCAAGGTGGCCCAGAATTACCTCAAGAAAGGCTCCAAGGTTTATATC
GAAGGCCAGCTCCAGACCCGGAAATGGGAAAAGGACGGCCAGGATCAGTACACGACCGAAATCGTGCTGCAGGGGTTCAA
TTCGACACTGACCATGCTCGACGGGCGCGGTGAAGGCGGCGGTGACCGTGACAGCGGCGGTTATGGCGGCAGTCGGCAGG
TTGAAAATCGCGGGCGGCCGTCCAGCGCCCCGGCCTTCGAGCCGGGCGGAATGGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.312

100

0.561
  ssb Vibrio cholerae strain A1552

50.867

100

0.561
  ssb Neisseria meningitidis MC58

42.458

100

0.484
  ssb Neisseria gonorrhoeae MS11

42.458

100

0.484