Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   OIO43_RS01695 Genome accession   NZ_CP107599
Coordinates   356689..357507 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain 1326584     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 351689..362507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIO43_RS01660 (OIO43_01660) - 352271..352401 (-) 131 Protein_317 hypothetical protein -
  OIO43_RS01665 (OIO43_01665) rpoZ 352440..352718 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  OIO43_RS01670 (OIO43_01670) gmk 352791..353420 (-) 630 WP_000015937.1 guanylate kinase -
  OIO43_RS01675 (OIO43_01675) ispH 353543..354493 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  OIO43_RS01680 (OIO43_01680) fimU 354663..355136 (+) 474 WP_001214059.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  OIO43_RS01685 (OIO43_01685) pilV 355130..355690 (+) 561 WP_086300325.1 type IV pilus modification protein PilV Machinery gene
  OIO43_RS01690 (OIO43_01690) pilW 355691..356692 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  OIO43_RS01695 (OIO43_01695) pilX 356689..357507 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OIO43_RS01700 (OIO43_01700) pilY1 357519..361373 (+) 3855 WP_000768947.1 PilC/PilY family type IV pilus protein Machinery gene
  OIO43_RS01705 (OIO43_01705) pilY2 361386..361868 (+) 483 WP_001046414.1 type IV pilin protein Machinery gene
  OIO43_RS01710 (OIO43_01710) pilE 361865..362290 (+) 426 WP_000788335.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=741208 OIO43_RS01695 WP_000149374.1 356689..357507(+) (pilX) [Acinetobacter baumannii strain 1326584]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=741208 OIO43_RS01695 WP_000149374.1 356689..357507(+) (pilX) [Acinetobacter baumannii strain 1326584]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993