Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   OIO43_RS01680 Genome accession   NZ_CP107599
Coordinates   354663..355136 (+) Length   157 a.a.
NCBI ID   WP_001214059.1    Uniprot ID   A0A009PK04
Organism   Acinetobacter baumannii strain 1326584     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 349663..360136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIO43_RS01655 (OIO43_01655) - 350126..352231 (-) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  OIO43_RS01660 (OIO43_01660) - 352271..352401 (-) 131 Protein_317 hypothetical protein -
  OIO43_RS01665 (OIO43_01665) rpoZ 352440..352718 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  OIO43_RS01670 (OIO43_01670) gmk 352791..353420 (-) 630 WP_000015937.1 guanylate kinase -
  OIO43_RS01675 (OIO43_01675) ispH 353543..354493 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  OIO43_RS01680 (OIO43_01680) fimU 354663..355136 (+) 474 WP_001214059.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  OIO43_RS01685 (OIO43_01685) pilV 355130..355690 (+) 561 WP_086300325.1 type IV pilus modification protein PilV Machinery gene
  OIO43_RS01690 (OIO43_01690) pilW 355691..356692 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  OIO43_RS01695 (OIO43_01695) pilX 356689..357507 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.47 Da        Isoelectric Point: 9.3085

>NTDB_id=741205 OIO43_RS01680 WP_001214059.1 354663..355136(+) (fimU) [Acinetobacter baumannii strain 1326584]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWKTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=741205 OIO43_RS01680 WP_001214059.1 354663..355136(+) (fimU) [Acinetobacter baumannii strain 1326584]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCAGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGTCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGAAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACTCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAATGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009PK04

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994