Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   OIO43_RS01685 Genome accession   NZ_CP107599
Coordinates   355130..355690 (+) Length   186 a.a.
NCBI ID   WP_086300325.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 1326584     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 350130..360690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIO43_RS01660 (OIO43_01660) - 352271..352401 (-) 131 Protein_317 hypothetical protein -
  OIO43_RS01665 (OIO43_01665) rpoZ 352440..352718 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  OIO43_RS01670 (OIO43_01670) gmk 352791..353420 (-) 630 WP_000015937.1 guanylate kinase -
  OIO43_RS01675 (OIO43_01675) ispH 353543..354493 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  OIO43_RS01680 (OIO43_01680) fimU 354663..355136 (+) 474 WP_001214059.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  OIO43_RS01685 (OIO43_01685) pilV 355130..355690 (+) 561 WP_086300325.1 type IV pilus modification protein PilV Machinery gene
  OIO43_RS01690 (OIO43_01690) pilW 355691..356692 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  OIO43_RS01695 (OIO43_01695) pilX 356689..357507 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20176.15 Da        Isoelectric Point: 8.2247

>NTDB_id=741206 OIO43_RS01685 WP_086300325.1 355130..355690(+) (pilV) [Acinetobacter baumannii strain 1326584]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASTEALSKSQAILVMRGLAENIRTNSTQASQYPTFVRS
YSNYTSDTPAPTSCFNSLCTASQLAQFDAYQAARNANQLGMRITMSNCPGVTNTMVQQRQCLFVFWGKTAPVITTNGTNT
SVDVSSCMSNNGVYVNNSTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=741206 OIO43_RS01685 WP_086300325.1 355130..355690(+) (pilV) [Acinetobacter baumannii strain 1326584]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGCTTACTCGAAGTTTTGGTTGCCTTAATTTTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAACTAAGAGCTATGGATGCCTCTACAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCAAGCTAGCCAGTATCCTACATTTGTGCGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATGTTTTAACTCTCTATGTACTGCCTCCCAACTTGCTCAATT
TGATGCCTATCAAGCAGCTAGAAATGCTAATCAACTGGGTATGAGAATTACGATGTCAAATTGTCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCAGTGCCTATTTGTCTTTTGGGGTAAAACTGCGCCAGTGATTACTACAAATGGAACAAATACT
AGTGTGGATGTTTCAAGTTGTATGAGTAATAACGGTGTTTACGTGAATAATTCAACTTGCTTAATGATGGAGGCATATTA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

99.462

100

0.995
  pilV Acinetobacter baylyi ADP1

41.398

100

0.414