Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   OIO43_RS01705 Genome accession   NZ_CP107599
Coordinates   361386..361868 (+) Length   160 a.a.
NCBI ID   WP_001046414.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 1326584     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 356386..366868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIO43_RS01695 (OIO43_01695) pilX 356689..357507 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OIO43_RS01700 (OIO43_01700) pilY1 357519..361373 (+) 3855 WP_000768947.1 PilC/PilY family type IV pilus protein Machinery gene
  OIO43_RS01705 (OIO43_01705) pilY2 361386..361868 (+) 483 WP_001046414.1 type IV pilin protein Machinery gene
  OIO43_RS01710 (OIO43_01710) pilE 361865..362290 (+) 426 WP_000788335.1 type IV pilin protein Machinery gene
  OIO43_RS01715 (OIO43_01715) rpsP 362437..362688 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  OIO43_RS01720 (OIO43_01720) rimM 362708..363256 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  OIO43_RS01725 (OIO43_01725) trmD 363302..364042 (+) 741 WP_000464600.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  OIO43_RS01730 (OIO43_01730) rplS 364251..364619 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  OIO43_RS01735 (OIO43_01735) - 364672..365613 (-) 942 WP_085916958.1 triacylglycerol lipase -
  OIO43_RS01740 (OIO43_01740) - 365728..366759 (-) 1032 WP_002007674.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17632.89 Da        Isoelectric Point: 8.8351

>NTDB_id=741210 OIO43_RS01705 WP_001046414.1 361386..361868(+) (pilY2) [Acinetobacter baumannii strain 1326584]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTRGNLLTNSAANGQTWVIRATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGSTTTCNTCEANSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=741210 OIO43_RS01705 WP_001046414.1 361386..361868(+) (pilY2) [Acinetobacter baumannii strain 1326584]
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACCAGAGGTAATTTATTAACAAATTCTGCTGCTAATGGTCAAAC
ATGGGTAATTAGAGCAACCACAACAGATTCGAGAAATTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCTGTTGATAATGATTGTGGTAGTACGACTACTTGTAATACATGTGAAGCGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-135)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

92.5

100

0.925
  comE Acinetobacter baylyi ADP1

40.698

100

0.438