Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   QCM05_RS00395 Genome accession   NZ_CP122515
Coordinates   84187..85197 (+) Length   336 a.a.
NCBI ID   WP_000664516.1    Uniprot ID   -
Organism   Helicobacter pylori strain HP22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 79187..90197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QCM05_RS00370 (QCM05_00370) - 79380..80702 (-) 1323 WP_279963028.1 M23 family metallopeptidase -
  QCM05_RS00375 (QCM05_00375) - 80712..81650 (-) 939 WP_279963030.1 outer membrane beta-barrel protein -
  QCM05_RS00380 (QCM05_00380) - 81659..82513 (-) 855 WP_120933257.1 outer membrane beta-barrel protein -
  QCM05_RS00385 (QCM05_00385) - 82503..83225 (-) 723 WP_279963035.1 hypothetical protein -
  QCM05_RS00390 (QCM05_00390) panB 83374..84186 (+) 813 WP_279963036.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  QCM05_RS00395 (QCM05_00395) ruvB 84187..85197 (+) 1011 WP_000664516.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QCM05_RS00400 (QCM05_00400) tatB 85264..85740 (+) 477 WP_279963039.1 Sec-independent protein translocase protein TatB -
  QCM05_RS00405 (QCM05_00405) tatC 85733..86491 (+) 759 WP_140543426.1 twin-arginine translocase subunit TatC -
  QCM05_RS00410 (QCM05_00410) queA 86495..87532 (+) 1038 WP_279963042.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  QCM05_RS00415 (QCM05_00415) rsmG 87529..88065 (+) 537 WP_279963043.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  QCM05_RS00420 (QCM05_00420) - 88059..88289 (+) 231 WP_000944427.1 PP0621 family protein -
  QCM05_RS00425 (QCM05_00425) - 88292..88699 (+) 408 WP_060869592.1 hypothetical protein -
  QCM05_RS00435 (QCM05_00435) - 88831..89433 (-) 603 WP_120933236.1 outer membrane protein -
  QCM05_RS00440 (QCM05_00440) - 89724..90098 (+) 375 WP_058337949.1 chemotaxis response regulator CheY -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37307.27 Da        Isoelectric Point: 6.0715

>NTDB_id=740936 QCM05_RS00395 WP_000664516.1 84187..85197(+) (ruvB) [Helicobacter pylori strain HP22]
MKERIVNLETLDFETSQEVSLRPNLWEDYIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=740936 QCM05_RS00395 WP_000664516.1 84187..85197(+) (ruvB) [Helicobacter pylori strain HP22]
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAATCTTTGGGA
AGATTATATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATAAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTGGCCGCCATTTTGACTAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTCAGATTGG
ATATTATCATAGGCTCAGGCCCAGCGGCTCAAACCATTAAAATTGATTTGCCCCCTTTCACTCTCATCGGCGCTACTACT
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGCTTTAGAATGCAATTTTATAGCCCTAGCGAACT
AGCCCTTATCATCAAAAAAGCTGCTGCTAAACTCAATCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
GTCTTTGTTGGCTAACGCTCAGGGACGACCGGTGGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCATGCGCTTTTAAAAATCCCCACTTTAAACCCCCAAACTTTATTTTAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(256-325)

RuvB AAA lid domain (AAA_lid_4)

(182-255)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Helicobacter pylori 26695

97.619

100

0.976
  ruvB Bacillus subtilis subsp. subtilis str. 168

53.87

96.131

0.518
  ruvB Streptococcus pneumoniae TIGR4

50.774

96.131

0.488
  ruvB Streptococcus pneumoniae R6

50.774

96.131

0.488
  ruvB Streptococcus pneumoniae D39

50.774

96.131

0.488
  ruvB Synechocystis sp. PCC 6803

51.104

94.345

0.482