Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QC806_RS21420 Genome accession   NZ_CP122507
Coordinates   4361105..4361641 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain W444     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4356105..4366641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QC806_RS21400 soxR 4357833..4358297 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  QC806_RS21405 soxS 4358383..4358706 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  QC806_RS21410 pdeC 4358709..4360295 (-) 1587 Protein_4192 c-di-GMP phosphodiesterase PdeC -
  QC806_RS21415 yjcB 4360725..4361006 (+) 282 WP_284631643.1 YjcB family protein -
  QC806_RS21420 ssb 4361105..4361641 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  QC806_RS21425 uvrA 4361895..4364717 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  QC806_RS21430 yjbR 4364752..4365108 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  QC806_RS21435 yjbQ 4365112..4365528 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  QC806_RS21440 aphA 4365639..4366352 (-) 714 WP_001395166.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=740918 QC806_RS21420 WP_000168305.1 4361105..4361641(-) (ssb) [Escherichia coli strain W444]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=740918 QC806_RS21420 WP_000168305.1 4361105..4361641(-) (ssb) [Escherichia coli strain W444]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489