Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QC806_RS17375 Genome accession   NZ_CP122507
Coordinates   3520291..3520896 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain W444     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3515291..3525896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QC806_RS17355 aes 3515328..3516287 (+) 960 WP_063501955.1 acetyl esterase -
  QC806_RS17360 hemH 3516284..3517246 (-) 963 WP_001250088.1 ferrochelatase -
  QC806_RS17365 adk 3517482..3518126 (-) 645 WP_001220233.1 adenylate kinase -
  QC806_RS17370 htpG 3518307..3520181 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  QC806_RS17375 recR 3520291..3520896 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  QC806_RS17380 ybaB 3520896..3521225 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  QC806_RS17385 dnaX 3521278..3523209 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  QC806_RS17390 apt 3523338..3523889 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  QC806_RS17395 ybaN 3524042..3524419 (-) 378 WP_001188905.1 DUF454 family protein -
  QC806_RS17400 priC 3524489..3525016 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  QC806_RS17405 rsmS 3525030..3525191 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=740907 QC806_RS17375 WP_001195025.1 3520291..3520896(-) (recR) [Escherichia coli strain W444]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=740907 QC806_RS17375 WP_001195025.1 3520291..3520896(-) (recR) [Escherichia coli strain W444]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCACAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443