Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QC809_RS21640 Genome accession   NZ_CP122499
Coordinates   4359581..4360117 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain W409     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4354581..4365117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QC809_RS21620 soxR 4356309..4356773 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  QC809_RS21625 soxS 4356859..4357182 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  QC809_RS21630 pdeC 4357185..4358771 (-) 1587 WP_000019531.1 c-di-GMP phosphodiesterase PdeC -
  QC809_RS21635 yjcB 4359201..4359482 (+) 282 WP_001295689.1 YjcB family protein -
  QC809_RS21640 ssb 4359581..4360117 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  QC809_RS21645 uvrA 4360371..4363193 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  QC809_RS21650 yjbR 4363228..4363584 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  QC809_RS21655 yjbQ 4363588..4364004 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  QC809_RS21660 aphA 4364115..4364807 (-) 693 WP_123000301.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=740757 QC809_RS21640 WP_000168305.1 4359581..4360117(-) (ssb) [Escherichia coli strain W409]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=740757 QC809_RS21640 WP_000168305.1 4359581..4360117(-) (ssb) [Escherichia coli strain W409]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACTGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489