Detailed information NTG0740731

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: QC809_RS10120
• Genome accession: NZ_CP122499
• Coordinates: 2043488..2044498 (+)
• Length: 336 a.a.
• NCBI ID: WP_042111557.1
• Uniprot ID: -
• Organism: Escherichia coli strain W409
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2038488..2049498

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QC809_RS10090	nudB	2040212..2040664 (+)	453	WP_001300367.1	dihydroneopterin triphosphate diphosphatase	-
QC809_RS10095	yebC	2040693..2041433 (+)	741	WP_000907234.1	YebC/PmpR family DNA-binding transcriptional regulator	-
QC809_RS10100	ruvC	2041468..2041989 (+)	522	WP_001295503.1	crossover junction endodeoxyribonuclease RuvC	-
QC809_RS10105	yebB	2041991..2042593 (-)	603	WP_001024904.1	YebB family permuted papain-like enzyme	-
QC809_RS10110	yobI	2042664..2042729 (+)	66	WP_072094247.1	stress response small protein YobI	-
QC809_RS10115	ruvA	2042868..2043479 (+)	612	WP_000580327.1	Holliday junction branch migration protein RuvA	-
QC809_RS10120	ruvB	2043488..2044498 (+)	1011	WP_042111557.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
QC809_RS10125	znuB	2044839..2045624 (-)	786	WP_000571479.1	zinc ABC transporter permease subunit ZnuB	-
QC809_RS10130	znuC	2045621..2046376 (-)	756	WP_000202990.1	zinc ABC transporter ATP-binding protein ZnuC	-
QC809_RS10135	znuA	2046455..2047387 (+)	933	WP_001300644.1	zinc ABC transporter substrate-binding protein ZnuA	-
QC809_RS10140	mepM	2047403..2048725 (+)	1323	WP_001184045.1	murein DD-endopeptidase MepM	-

Sequence

Protein

• Length: 336 a.a.
• Molecular weight: 37187.84 Da
• Isoelectric Point: 4.8569

>NTDB_id=740731 QC809_RS10120 WP_042111557.1 2043488..2044498(+) (ruvB) [Escherichia coli strain W409]
MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG
VKLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG
TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA
TTRAWNHFGITPPEMP

Nucleotide

• Length: 1011 bp

>NTDB_id=740731 QC809_RS10120 WP_042111557.1 2043488..2044498(+) (ruvB) [Escherichia coli strain W409]
ATGATTGAAGCAGACCGTCTGATTTCTGCCGGTACCACTTTGCCGGAAGATGTAGCAGATCGCGCCATTCGCCCTAAATT
ACTGGAAGAGTATGTTGGTCAGCCGCAGGTTCGTTCACAGATGGAGATTTTCATCAAAGCAGCGAAACTGCGCGGCGATG
CCCTCGATCATTTGTTGATTTTTGGTCCTCCGGGGTTGGGTAAAACTACGCTTGCCAACATTGTCGCCAATGAAATGGGC
GTTAAATTACGCACGACTTCTGGTCCGGTGCTGGAAAAGGCGGGCGATCTGGCAGCGATGCTCACTAACCTTGAACCGCA
TGACGTGCTGTTTATTGATGAGATCCACCGTCTATCGCCAGTTGTTGAAGAAGTGCTGTACCCGGCAATGGAAGACTACC
AACTGGATATCATGATTGGTGAAGGTCCGGCGGCACGCTCCATTAAAATTGATTTGCCGCCGTTTACCCTGATTGGTGCA
ACCACGCGCGCAGGTTCGCTGACATCACCGTTGCGCGACCGTTTTGGGATTGTGCAACGTCTGGAGTTTTATCAGGTGCC
GGATCTGCAATATATCGTCAGTCGCAGCGCACGCTTTATGGGGCTTGAGATGAGTGATGACGGGGCGCTGGAAGTTGCTC
GTCGCGCTCGCGGTACGCCGCGCATTGCCAACCGTCTGCTGCGTCGAGTGCGTGATTTCGCCGAAGTGAAGCACGATGGC
ACCATCTCGGCAGATATCGCTGCTCAGGCGTTGGATATGTTGAATGTCGATGCTGAAGGTTTCGATTATATGGACCGCAA
GTTATTGCTGGCGGTAATCGATAAGTTCTTTGGTGGGCCGGTAGGTCTGGATAACCTTGCGGCAGCCATTGGCGAAGAAC
GTGAAACCATTGAGGATGTGCTGGAACCTTATTTGATTCAGCAAGGCTTTTTGCAGCGTACACCGCGTGGGCGTATGGCG
ACGACGCGGGCGTGGAATCACTTTGGCATAACGCCGCCAGAAATGCCGTAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (184-257)

• RuvB C-terminal winged helix domain (WHD_RuvB) (259-328)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (23-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	60.486	97.917	0.592
ruvB	Streptococcus pneumoniae TIGR4	58.621	94.94	0.557
ruvB	Streptococcus pneumoniae R6	58.621	94.94	0.557
ruvB	Streptococcus pneumoniae D39	58.621	94.94	0.557
ruvB	Synechocystis sp. PCC 6803	53.251	96.131	0.512
ruvB	Helicobacter pylori 26695	51.724	94.94	0.491