Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QC805_RS20735 Genome accession   NZ_CP122496
Coordinates   4184803..4185339 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain a7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4179803..4190339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QC805_RS20715 soxR 4181531..4181995 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  QC805_RS20720 soxS 4182081..4182404 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  QC805_RS20725 pdeC 4182407..4183993 (-) 1587 Protein_4056 c-di-GMP phosphodiesterase PdeC -
  QC805_RS20730 yjcB 4184423..4184704 (+) 282 WP_001295689.1 YjcB family protein -
  QC805_RS20735 ssb 4184803..4185339 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  QC805_RS20740 uvrA 4185593..4188415 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  QC805_RS20745 yjbR 4188450..4188806 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  QC805_RS20750 yjbQ 4188810..4189226 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  QC805_RS20755 aphA 4189337..4190050 (-) 714 WP_001395166.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=740677 QC805_RS20735 WP_000168305.1 4184803..4185339(-) (ssb) [Escherichia coli strain a7]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=740677 QC805_RS20735 WP_000168305.1 4184803..4185339(-) (ssb) [Escherichia coli strain a7]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489