Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   K6J91_RS14975 Genome accession   NZ_AP024624
Coordinates   2827652..2828347 (-) Length   231 a.a.
NCBI ID   WP_003246034.1    Uniprot ID   Q02170
Organism   Bacillus subtilis strain BEST3106     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2822652..2833347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J91_RS14950 (BsBEST3106_28680) minD 2823588..2824394 (-) 807 WP_014480454.1 septum site-determining protein MinD -
  K6J91_RS14955 (BsBEST3106_28690) minC 2824396..2825076 (-) 681 WP_004398901.1 septum site-determining protein MinC -
  K6J91_RS14960 (BsBEST3106_28700) mreD 2825129..2825647 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  K6J91_RS14965 (BsBEST3106_28710) mreC 2825644..2826516 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  K6J91_RS14970 (BsBEST3106_28720) mreB 2826547..2827560 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  K6J91_RS14975 (BsBEST3106_28730) ysxA/radC 2827652..2828347 (-) 696 WP_003246034.1 DNA repair protein RadC Machinery gene
  K6J91_RS14980 (BsBEST3106_28740) maf 2828384..2828953 (-) 570 WP_014480456.1 Maf family nucleotide pyrophosphatase -
  K6J91_RS14985 (BsBEST3106_28750) spoIIB 2829106..2830104 (-) 999 WP_014480457.1 stage II sporulation protein SpoIIB -
  K6J91_RS14990 (BsBEST3106_28760) comC 2830238..2830984 (-) 747 WP_072592551.1 A24 family peptidase Machinery gene
  K6J91_RS14995 (BsBEST3106_28770) folC 2831124..2832416 (-) 1293 WP_014480460.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26146.48 Da        Isoelectric Point: 7.9285

>NTDB_id=74066 K6J91_RS14975 WP_003246034.1 2827652..2828347(-) (ysxA/radC) [Bacillus subtilis strain BEST3106]
MVIHDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=74066 K6J91_RS14975 WP_003246034.1 2827652..2828347(-) (ysxA/radC) [Bacillus subtilis strain BEST3106]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGAGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCGAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCTGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02170

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424

Multiple sequence alignment