Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QC807_RS21920 Genome accession   NZ_CP122492
Coordinates   4504573..4505109 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain a15     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4499573..4510109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QC807_RS21900 soxR 4501301..4501765 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  QC807_RS21905 soxS 4501851..4502174 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  QC807_RS21910 pdeC 4502177..4503763 (-) 1587 WP_000019549.1 c-di-GMP phosphodiesterase PdeC -
  QC807_RS21915 yjcB 4504193..4504474 (+) 282 WP_001295689.1 YjcB family protein -
  QC807_RS21920 ssb 4504573..4505109 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  QC807_RS21925 uvrA 4505363..4508185 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  QC807_RS21930 yjbR 4508220..4508576 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  QC807_RS21935 yjbQ 4508580..4508996 (-) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  QC807_RS21940 aphA 4509107..4509820 (-) 714 WP_001307512.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=740599 QC807_RS21920 WP_000168305.1 4504573..4505109(-) (ssb) [Escherichia coli strain a15]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=740599 QC807_RS21920 WP_000168305.1 4504573..4505109(-) (ssb) [Escherichia coli strain a15]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489