Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OEG81_RS17550 Genome accession   NZ_CP107548
Coordinates   3754051..3754539 (-) Length   162 a.a.
NCBI ID   WP_264130556.1    Uniprot ID   -
Organism   Pollutimonas sp. M17     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3749051..3759539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OEG81_RS17530 (OEG81_17530) - 3749841..3750740 (+) 900 WP_264130552.1 LysR family transcriptional regulator -
  OEG81_RS17535 (OEG81_17535) - 3750844..3751809 (+) 966 WP_264130553.1 Bug family tripartite tricarboxylate transporter substrate binding protein -
  OEG81_RS17540 (OEG81_17540) - 3751870..3753243 (+) 1374 WP_264130554.1 amidase -
  OEG81_RS17545 (OEG81_17545) - 3753302..3754030 (+) 729 WP_264130555.1 GntR family transcriptional regulator -
  OEG81_RS17550 (OEG81_17550) ssb 3754051..3754539 (-) 489 WP_264130556.1 single-stranded DNA-binding protein Machinery gene
  OEG81_RS17555 (OEG81_17555) - 3754646..3755854 (-) 1209 WP_264130557.1 MFS transporter -
  OEG81_RS17560 (OEG81_17560) uvrA 3755986..3758835 (+) 2850 WP_264130558.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17774.76 Da        Isoelectric Point: 5.9527

>NTDB_id=740565 OEG81_RS17550 WP_264130556.1 3754051..3754539(-) (ssb) [Pollutimonas sp. M17]
MASVNKVILVGNLGRDPEVRYSPDGAAICNVSIATTSQWKDKATGEKREETEWHRVVFYNRLAEIAGEYLKKGRSVYVEG
RLKTRKWQDKDTGADRYSTDIVADQMQMLGGRGDDAGMGGGGTEYNQAPAQQRSQRPAQPRPAAPQASPAANLADMDDDI
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=740565 OEG81_RS17550 WP_264130556.1 3754051..3754539(-) (ssb) [Pollutimonas sp. M17]
ATGGCCTCAGTCAACAAAGTCATTCTCGTCGGTAATCTTGGACGAGACCCCGAAGTGCGCTACAGCCCCGACGGCGCCGC
CATCTGCAACGTATCCATTGCCACCACCTCGCAATGGAAGGACAAGGCCACGGGCGAAAAGCGCGAAGAAACCGAATGGC
ACCGCGTGGTCTTCTACAACCGCCTGGCTGAAATCGCTGGCGAATACCTGAAGAAAGGCCGTTCCGTCTATGTGGAAGGC
CGCCTCAAGACCCGCAAGTGGCAAGACAAGGACACCGGCGCCGACCGCTACAGCACCGACATCGTTGCCGACCAGATGCA
GATGCTGGGCGGCCGCGGCGACGACGCCGGCATGGGCGGCGGCGGTACCGAATACAACCAGGCGCCTGCCCAGCAGCGCA
GCCAGCGCCCCGCCCAGCCGCGTCCCGCCGCGCCGCAGGCCTCGCCCGCGGCCAACCTGGCCGATATGGACGACGATATT
CCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.111

100

0.623
  ssb Glaesserella parasuis strain SC1401

49.727

100

0.562
  ssb Neisseria meningitidis MC58

51.136

100

0.556
  ssb Neisseria gonorrhoeae MS11

51.136

100

0.556