Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OE648_RS01780 Genome accession   NZ_CP107544
Coordinates   370778..371299 (+) Length   173 a.a.
NCBI ID   WP_042610650.1    Uniprot ID   A0A1H1Q0A8
Organism   Pseudomonas moraviensis strain EFBE32     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 365778..376299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OE648_RS01765 (OE648_01760) bfr 365812..366279 (+) 468 WP_042610653.1 bacterioferritin -
  OE648_RS01770 (OE648_01765) uvrA 366345..369179 (-) 2835 WP_042610652.1 excinuclease ABC subunit UvrA -
  OE648_RS01775 (OE648_01770) - 369371..370768 (+) 1398 WP_065615575.1 MFS transporter -
  OE648_RS01780 (OE648_01775) ssb 370778..371299 (+) 522 WP_042610650.1 single-stranded DNA-binding protein Machinery gene
  OE648_RS01785 (OE648_01780) - 371497..372654 (-) 1158 WP_065615576.1 glutathionylspermidine synthase family protein -
  OE648_RS01790 (OE648_01785) - 372656..373357 (-) 702 WP_333715283.1 DUF1190 domain-containing protein -
  OE648_RS01795 (OE648_01790) - 373376..373801 (-) 426 WP_064363996.1 DUF350 domain-containing protein -
  OE648_RS01800 (OE648_01795) - 373817..374467 (-) 651 WP_281925186.1 DUF2491 family protein -
  OE648_RS01805 (OE648_01800) - 374680..375378 (-) 699 WP_042610646.1 PspA/IM30 family protein -
  OE648_RS01810 (OE648_01805) - 375396..375977 (-) 582 WP_236705268.1 YjfI family protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19212.36 Da        Isoelectric Point: 5.9314

>NTDB_id=740513 OE648_RS01780 WP_042610650.1 370778..371299(+) (ssb) [Pseudomonas moraviensis strain EFBE32]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQQAPRQQAPRPQQSAPQQRSAPPAPQQAAPQP
APDFDSFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=740513 OE648_RS01780 WP_042610650.1 370778..371299(+) (ssb) [Pseudomonas moraviensis strain EFBE32]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAATGGACCGACAAGCAGACCGGTCAGAAGGTCGAAAAGACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAGGTTGCCGAGATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAGGACGGCATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAATTGCTCGGCGGCCGTCCACAGCAGGGCGACCAGCAAGGCGGCGGCAACAATTACCAGCAGCAGGCGCCACGTC
AGCAGGCCCCACGCCCGCAGCAGTCGGCTCCGCAGCAGCGTTCGGCTCCACCAGCGCCGCAGCAGGCCGCACCGCAACCG
GCTCCGGATTTCGACAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H1Q0A8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.923

100

0.613
  ssb Neisseria meningitidis MC58

48.066

100

0.503
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.503
  ssb Glaesserella parasuis strain SC1401

47.514

100

0.497