Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   OFY20_RS09645 Genome accession   NZ_CP107524
Coordinates   1877390..1877881 (-) Length   163 a.a.
NCBI ID   WP_000609585.1    Uniprot ID   A0AAV3JH34
Organism   Streptococcus agalactiae strain SA5087     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1878520..1879325 1877390..1877881 flank 639


Gene organization within MGE regions


Location: 1877390..1879325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OFY20_RS09645 (OFY20_09645) ssbA 1877390..1877881 (-) 492 WP_000609585.1 single-stranded DNA-binding protein Machinery gene
  OFY20_RS09650 (OFY20_09650) rpsF 1877893..1878180 (-) 288 WP_001151773.1 30S ribosomal protein S6 -
  OFY20_RS09655 (OFY20_09655) - 1878520..1879325 (+) 806 WP_088181596.1 IS5-like element IS1381A family transposase -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18165.81 Da        Isoelectric Point: 4.9119

>NTDB_id=740496 OFY20_RS09645 WP_000609585.1 1877390..1877881(-) (ssbA) [Streptococcus agalactiae strain SA5087]
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQSGEREADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVAESFQLLESRATREGGSPNSYNNGGYNNAPSNNSYSASSQQTPNFSRDESPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=740496 OFY20_RS09645 WP_000609585.1 1877390..1877881(-) (ssbA) [Streptococcus agalactiae strain SA5087]
ATGATTAATAATGTAGTACTTGTAGGTCGCATGACCCGTGATGCAGAACTTCGTTATACACCAAGTAATCAAGCGGTAGC
CACTTTTTCACTTGCAGTTAATCGTAATTTTAAAAATCAATCTGGCGAACGTGAGGCTGATTTTATTAACTGTGTTATTT
GGCGCCAACAAGCTGAAAACTTGGCTAACTGGGCAAAAAAAGGTGCTTTGGTTGGAATTACAGGTCGTATCCAAACGCGT
AATTATGAAAACCAACAAGGTCAACGTGTCTATGTAACAGAAGTTGTTGCGGAAAGTTTCCAATTATTGGAAAGTCGTGC
TACACGAGAAGGTGGTTCACCTAACTCTTATAATAACGGTGGCTATAACAATGCTCCGTCAAATAATAGTTATTCAGCTT
CTTCTCAACAAACACCTAATTTTAGTCGTGATGAGAGTCCGTTTGGTAACTCAAATCCAATGGATATTTCAGATGATGAT
CTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.714

100

0.62
  ssb Latilactobacillus sakei subsp. sakei 23K

59.064

100

0.62
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.963

66.871

0.374
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368