Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   QAO15_RS01950 Genome accession   NZ_CP122485
Coordinates   355451..356455 (+) Length   334 a.a.
NCBI ID   WP_001005768.1    Uniprot ID   P66757
Organism   Staphylococcus aureus strain SW-MRSA57     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 350451..361455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAO15_RS01915 (QAO15_01910) mreD 350993..351523 (+) 531 WP_001259926.1 rod shape-determining protein MreD -
  QAO15_RS01920 (QAO15_01915) rplU 351759..352067 (+) 309 WP_000457386.1 50S ribosomal protein L21 -
  QAO15_RS01925 (QAO15_01920) - 352073..352393 (+) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  QAO15_RS01930 (QAO15_01925) rpmA 352405..352689 (+) 285 WP_000916187.1 50S ribosomal protein L27 -
  QAO15_RS01935 (QAO15_01930) obgE 353043..354335 (+) 1293 WP_000496100.1 GTPase ObgE -
  QAO15_RS01940 (QAO15_01935) - 354348..354803 (+) 456 WP_000368902.1 ACT domain-containing protein -
  QAO15_RS01945 (QAO15_01940) ruvA 354817..355419 (+) 603 WP_000271550.1 Holliday junction branch migration protein RuvA Machinery gene
  QAO15_RS01950 (QAO15_01945) ruvB 355451..356455 (+) 1005 WP_001005768.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QAO15_RS01955 (QAO15_01950) queA 356457..357482 (+) 1026 WP_001019178.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  QAO15_RS01960 (QAO15_01955) tgt 357505..358644 (+) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  QAO15_RS01965 (QAO15_01960) yajC 358663..358923 (+) 261 WP_001160682.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37645.94 Da        Isoelectric Point: 5.1876

>NTDB_id=739929 QAO15_RS01950 WP_001005768.1 355451..356455(+) (ruvB) [Staphylococcus aureus strain SW-MRSA57]
MNERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPPGLGKTTLSNIIANEMEVN
IRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATT
RAGSLTGPLRDRFGVHLRLEYYNESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQI
YIETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIEDVYEPFLIQKGFLERTPRGRKATP
LAYEHFAKSNEERG

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=739929 QAO15_RS01950 WP_001005768.1 355451..356455(+) (ruvB) [Staphylococcus aureus strain SW-MRSA57]
ATGAATGAGCGTATGGTTGATCAATCAATGCATAGTGAAGAAACTGATTTCGAATTGTCGCTTAGACCTACGAGATTACG
ACAATATATTGGTCAAAATTCAATAAAAAGTAATTTAGAAGTATTTATTAAAGCGGCTAAACTTCGTCATGAACCATTAG
ATCATGTATTGCTTTTTGGCCCCCCTGGATTAGGTAAGACAACATTATCTAATATCATTGCCAATGAAATGGAAGTTAAT
ATACGTACAGTATCAGGGCCTTCATTAGAAAGACCTGGTGATTTGGCTGCAATTTTATCAGGACTTCAACCTGGAGATGT
ATTGTTTATTGATGAAATACACAGACTGAGTAGTGTTGTTGAAGAAGTGTTATACCCTGCAATGGAAGATTTCTTTTTAG
ATATTATCATTGGTAAAGGCGATGAGGCTAGAAGTATCCGTATCGACTTACCTCCATTCACTTTGGTAGGTGCAACAACG
CGAGCTGGCAGCTTAACAGGTCCACTAAGGGATCGATTTGGTGTGCACTTAAGATTAGAATATTATAATGAATCAGATTT
AAAAGAAATCATTATTAGAACAGCTGAGGTTTTAGGCACAGGTATTGATGAAGAAAGTGCCATTGAACTTGCTAAACGTT
CTAGAGGGACTCCAAGAGTAGCAAATCGACTATTGAAGCGGGTAAGAGACTTCCAGCAAGTGAATGAAGATGAACAAATA
TACATTGAAACAACGAAGCACGCATTAGGTTTACTTCAAGTTGATCAACACGGACTAGATTACATTGATCATAAAATGAT
GAACTGTATTATTAAGCAGTATAATGGTGGACCTGTTGGTTTAGATACGATTGCCGTAACAATTGGTGAAGAACGTATTA
CAATTGAGGACGTTTATGAGCCATTTCTTATTCAGAAAGGCTTTTTAGAACGTACGCCACGTGGCAGAAAAGCAACACCA
TTAGCTTATGAACATTTTGCAAAGTCGAATGAGGAGAGAGGATAA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(182-255)

RuvB C-terminal winged helix domain (WHD_RuvB)

(257-326)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P66757

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

65.951

97.605

0.644
  ruvB Streptococcus pneumoniae TIGR4

58.182

98.802

0.575
  ruvB Streptococcus pneumoniae R6

57.879

98.802

0.572
  ruvB Streptococcus pneumoniae D39

57.879

98.802

0.572
  ruvB Helicobacter pylori 26695

56.481

97.006

0.548
  ruvB Synechocystis sp. PCC 6803

53.75

95.808

0.515