Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K5607_RS13800 Genome accession   NZ_AP019782
Coordinates   3126044..3126556 (-) Length   170 a.a.
NCBI ID   WP_054775044.1    Uniprot ID   A0A8D4VQT6
Organism   Methylogaea oryzae strain E10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3121044..3131556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5607_RS13775 (MoryE10_26970) - 3121597..3121953 (+) 357 WP_054774254.1 hypothetical protein -
  K5607_RS13780 (MoryE10_26980) - 3122095..3122460 (-) 366 WP_054774255.1 cupin domain-containing protein -
  K5607_RS13785 (MoryE10_26990) - 3122555..3122863 (+) 309 WP_221047357.1 hypothetical protein -
  K5607_RS13790 (MoryE10_27000) acs 3122911..3124851 (+) 1941 WP_221047358.1 acetate--CoA ligase -
  K5607_RS13795 (MoryE10_27010) - 3125082..3125894 (-) 813 WP_221047359.1 hypothetical protein -
  K5607_RS13800 (MoryE10_27020) ssb 3126044..3126556 (-) 513 WP_054775044.1 single-stranded DNA-binding protein Machinery gene
  K5607_RS13805 (MoryE10_27030) - 3126675..3128039 (-) 1365 WP_221047360.1 MFS transporter -
  K5607_RS13810 (MoryE10_27040) - 3128328..3128888 (+) 561 WP_054774581.1 hypothetical protein -
  K5607_RS13815 (MoryE10_27050) - 3128960..3129295 (+) 336 WP_054774580.1 hypothetical protein -
  K5607_RS13820 (MoryE10_27060) - 3129313..3130002 (-) 690 WP_221047361.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18641.55 Da        Isoelectric Point: 5.3240

>NTDB_id=73986 K5607_RS13800 WP_054775044.1 3126044..3126556(-) (ssb) [Methylogaea oryzae strain E10]
MAKGTLNKVILIGNLGADPEVRYMPNGGAVATLRVATTDAWKDKQTGQQQERTEWHRVTFYQRTAEICGEYLRKGSKIYV
EGQLRTRKWQDKDGQDRYTTEIVGDQMQMLDGKGGGGGGGGRESDDYGAPYSPPQPRSSGNRAPQGRPQAQAPEPGFSGG
LDDFDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=73986 K5607_RS13800 WP_054775044.1 3126044..3126556(-) (ssb) [Methylogaea oryzae strain E10]
ATGGCAAAAGGCACACTGAACAAGGTCATCCTCATCGGCAACCTGGGGGCCGATCCGGAAGTCCGTTACATGCCCAACGG
CGGCGCCGTGGCCACCCTGCGGGTTGCTACCACGGATGCCTGGAAGGACAAGCAGACCGGCCAACAGCAGGAGCGCACCG
AGTGGCACCGGGTGACGTTTTATCAGCGCACCGCCGAGATTTGCGGCGAATACCTGCGCAAGGGCAGCAAGATCTACGTG
GAAGGCCAGTTGCGCACTCGCAAGTGGCAGGATAAGGACGGCCAGGATCGTTACACCACCGAAATCGTCGGCGACCAGAT
GCAGATGCTGGACGGCAAGGGCGGCGGCGGTGGCGGCGGCGGTCGCGAATCGGACGATTACGGCGCGCCGTACAGTCCGC
CGCAGCCGCGATCTTCCGGCAACCGTGCGCCCCAGGGCCGTCCGCAAGCGCAAGCTCCGGAGCCCGGCTTCAGCGGCGGC
TTGGACGATTTCGACGACGATATCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.494

100

0.571
  ssb Glaesserella parasuis strain SC1401

51.648

100

0.553
  ssb Neisseria meningitidis MC58

46.552

100

0.476
  ssb Neisseria gonorrhoeae MS11

45.977

100

0.471

Multiple sequence alignment