Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   P8T65_RS39200 Genome accession   NZ_CP122458
Coordinates   8907432..8908502 (+) Length   356 a.a.
NCBI ID   WP_316730113.1    Uniprot ID   -
Organism   Streptomyces sp. 11x1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8902432..8913502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8T65_RS39170 (P8T65_39140) - 8902896..8903435 (+) 540 WP_316730108.1 hypothetical protein -
  P8T65_RS39175 (P8T65_39145) pdxS 8903735..8904652 (+) 918 WP_033532596.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  P8T65_RS39180 (P8T65_39150) pdxT 8904659..8905267 (+) 609 WP_316730110.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  P8T65_RS39185 (P8T65_39155) - 8905316..8906068 (+) 753 WP_184896346.1 YebC/PmpR family DNA-binding transcriptional regulator -
  P8T65_RS39190 (P8T65_39160) ruvC 8906213..8906743 (+) 531 WP_230219194.1 crossover junction endodeoxyribonuclease RuvC -
  P8T65_RS39195 (P8T65_39165) ruvA 8906740..8907345 (+) 606 WP_184896348.1 Holliday junction branch migration protein RuvA -
  P8T65_RS39200 (P8T65_39170) ruvB 8907432..8908502 (+) 1071 WP_316730113.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  P8T65_RS39205 (P8T65_39175) yajC 8908677..8909186 (+) 510 WP_184896352.1 preprotein translocase subunit YajC -
  P8T65_RS39210 (P8T65_39180) secD 8909320..8911110 (+) 1791 WP_316730114.1 protein translocase subunit SecD -
  P8T65_RS39215 (P8T65_39185) secF 8911112..8912206 (+) 1095 WP_316730115.1 protein translocase subunit SecF -
  P8T65_RS39220 (P8T65_39190) - 8912203..8912742 (+) 540 WP_184896358.1 adenine phosphoribosyltransferase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38144.41 Da        Isoelectric Point: 4.7088

>NTDB_id=739728 P8T65_RS39200 WP_316730113.1 8907432..8908502(+) (ruvB) [Streptomyces sp. 11x1]
MNWDDTTDDTAADRLVGSVADREDQAVEAALRPKDLDEFIGQEKVREQLDLVLRAARARGATADHVLLSGAPGLGKTTLS
MIIAAEMGAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGATAIPLEL
PPFTLVGATTRAGLLPPPLRDRFGFTAHMEFYEPAELERVIHRSANLLDVEIDTDGAAEIAGRSRGTPRIANRLLRRVRD
YAQVKADGVITRDIASAALAVYEVDARGLDRLDRGVLEALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLVREGLLA
RTPRGRVATPAAWAHLGLTPPRGTTGGNGQQDLFGA

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=739728 P8T65_RS39200 WP_316730113.1 8907432..8908502(+) (ruvB) [Streptomyces sp. 11x1]
ATGAACTGGGACGACACGACCGACGACACCGCCGCCGACCGCCTGGTGGGCTCCGTCGCCGACCGTGAGGACCAGGCCGT
CGAGGCCGCCCTGCGCCCCAAGGACCTGGACGAGTTCATCGGCCAGGAGAAGGTCCGCGAACAGCTGGACCTGGTCCTGC
GGGCCGCACGCGCGCGCGGGGCCACCGCCGACCACGTCCTGCTCTCCGGCGCCCCGGGCCTCGGCAAGACCACGCTCTCG
ATGATCATCGCGGCCGAGATGGGCGCCCCCATCCGCATCACCTCCGGCCCCGCCATCCAGCACGCCGGCGACCTCGCCGC
GATCCTCTCCTCCCTCCAGGAGGGCGAGGTCCTCTTCCTCGACGAGATCCACCGCATGTCCCGGCCCGCCGAGGAGATGC
TGTACATGGCGATGGAGGACTTCCGCGTCGACGTGATCGTCGGCAAGGGCCCCGGTGCCACCGCGATCCCCCTCGAACTG
CCGCCCTTCACCCTGGTCGGCGCCACCACGCGCGCGGGACTGCTGCCGCCGCCGCTGCGCGACCGCTTCGGCTTCACCGC
GCACATGGAGTTCTACGAGCCCGCCGAACTGGAGCGCGTCATCCACCGCTCGGCGAACCTGCTCGACGTCGAGATCGACA
CGGACGGTGCCGCCGAGATCGCGGGCCGCTCCCGCGGCACCCCCCGTATCGCCAACCGCCTGCTGCGCCGCGTACGGGAC
TATGCGCAGGTCAAGGCCGACGGCGTCATCACCCGCGACATCGCCTCCGCCGCCCTCGCCGTGTACGAGGTCGACGCCCG
CGGCCTCGACCGCCTCGACCGGGGTGTCCTCGAAGCTCTGCTCAAGCTCTTCGGCGGCGGACCGGTCGGTCTGTCCACCC
TCGCCGTCGCGGTGGGGGAGGAGCGCGAGACCGTCGAGGAGGTCGCCGAACCCTTCCTCGTCCGCGAGGGACTGCTCGCC
CGCACCCCCCGCGGCCGGGTCGCCACCCCCGCCGCCTGGGCCCACCTCGGACTCACCCCGCCACGCGGCACGACCGGCGG
AAACGGACAACAGGACCTGTTCGGGGCGTGA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(192-265)

RuvB C-terminal winged helix domain (WHD_RuvB)

(267-336)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(31-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

55.152

92.697

0.511
  ruvB Synechocystis sp. PCC 6803

54.459

88.202

0.48
  ruvB Streptococcus pneumoniae TIGR4

53.333

88.483

0.472
  ruvB Streptococcus pneumoniae R6

53.333

88.483

0.472
  ruvB Streptococcus pneumoniae D39

53.333

88.483

0.472
  ruvB Helicobacter pylori 26695

51.815

85.112

0.441