Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdL   Type   Machinery gene
Locus tag   MchiMG62_RS11795 Genome accession   NZ_AP019781
Coordinates   2340697..2343054 (-) Length   785 a.a.
NCBI ID   WP_244987707.1    Uniprot ID   -
Organism   Methanoculleus chikugoensis strain MG62     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2335697..2348054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MchiMG62_RS11780 (MchiMG62_23080) - 2337063..2338529 (+) 1467 WP_221057123.1 cobyric acid synthase -
  MchiMG62_RS11785 (MchiMG62_23090) epdK 2338726..2339775 (-) 1050 WP_221057124.1 type II secretion system F family protein Machinery gene
  MchiMG62_RS11790 (MchiMG62_23100) epdJ 2339777..2340700 (-) 924 WP_221057125.1 type II secretion system F family protein Machinery gene
  MchiMG62_RS11795 (MchiMG62_23110) epdL 2340697..2343054 (-) 2358 WP_244987707.1 type II/IV secretion system ATPase subunit Machinery gene
  MchiMG62_RS11800 (MchiMG62_23120) - 2343140..2343778 (-) 639 WP_221057127.1 hypothetical protein -
  MchiMG62_RS11805 (MchiMG62_23130) - 2344150..2344956 (+) 807 WP_221057128.1 A24 family peptidase C-terminal domain-containing protein -
  MchiMG62_RS11810 (MchiMG62_23140) hisI 2344963..2345328 (+) 366 WP_221057129.1 phosphoribosyl-AMP cyclohydrolase -
  MchiMG62_RS11815 (MchiMG62_23150) - 2345352..2347253 (+) 1902 WP_221057130.1 PINc/VapC family ATPase -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 87365.60 Da        Isoelectric Point: 4.5402

>NTDB_id=73970 MchiMG62_RS11795 WP_244987707.1 2340697..2343054(-) (epdL) [Methanoculleus chikugoensis strain MG62]
MESVDAGLPFPSPEEDETVPEVLRPVTDEMNEQPESSPVQAQQSAGIRSLIETAAMSDDSAESHASAEKDPVRALLERIG
RSSPDGAEEVVSAPTVETDDLPTGPEMPADPPAAVEKLAAKPDAPASSPGYHAPAGILERVKGWREGDKSGTTQSKPRVA
EAVDDPGIEEEISDGVVTVEELGNLADLILPKSATFTIDELSINRGENRFDFVDNARVVSEFDDIFSQSFSSTSLAAAAA
QVVTPVEEVPQPRFGFLKKLQVPKVGVAVEEYNATLHGPLVDLAMRPSPGVEEIELYPVNEPYAYVRVTYDSTTHEYTYN
VIEPVLTPGEQMLFAEIKERLFETLNITSRDLTREEARTALRDAANTIIADYGIRLDPLGREKILYHVEKEFLGDGLIDP
VMHDKYIEDISCDGVGSAIFVYHTTYESMKTSLIYHDHVELDSFVTKLAQRAGKYISIAEPMLDATMSDGSRIQMTLGAE
VTAHGSTFTIRKFREEPITPTDLIEWHTFSPLGIAFIWLAVENAKSCIFAGGTASGKTTTLNAISLFIPPLAKIVTLEDT
RELKLPHPNWIPSITRDSFSQDGRGEIDMYELLRAALRQRPEYILVGEVRGKEALTLFQAMSTGHVTYATMHADSVASAV
HRLENPPIDVPRNMLSALSLMSIQVQARIGGQRIRRNKQLIEILDIDPRTNELITNEVFRWHPATDEIRYSGKSYILEQI
MEDRGWSEERMREELKRRQEVLEWMRIKKIRHFRDVSKVLISYFRDPETVVQRVRVDLYGEGGSA

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=73970 MchiMG62_RS11795 WP_244987707.1 2340697..2343054(-) (epdL) [Methanoculleus chikugoensis strain MG62]
GTGGAGAGCGTCGATGCGGGTTTGCCGTTCCCGTCTCCCGAGGAGGATGAGACGGTCCCGGAGGTTCTCAGGCCCGTCAC
CGATGAGATGAACGAGCAGCCGGAGTCGTCTCCGGTGCAGGCGCAACAGAGCGCGGGTATCCGTTCGCTCATCGAGACGG
CGGCGATGTCGGACGACTCCGCCGAATCGCATGCATCCGCCGAGAAGGACCCGGTCCGTGCGCTTCTCGAACGGATCGGC
CGGAGCAGTCCGGACGGCGCCGAAGAGGTCGTCTCCGCCCCGACGGTAGAGACGGACGATCTCCCTACAGGGCCGGAGAT
GCCGGCTGATCCGCCGGCGGCGGTTGAGAAACTCGCTGCGAAGCCGGATGCGCCGGCTTCTTCCCCCGGATACCATGCTC
CCGCGGGAATCCTCGAACGGGTGAAAGGGTGGCGTGAGGGCGATAAATCCGGCACCACCCAATCGAAACCCCGCGTTGCG
GAAGCGGTCGACGATCCCGGGATCGAAGAGGAGATCTCTGACGGCGTGGTTACGGTCGAGGAGCTCGGAAATCTGGCGGA
TTTAATCCTCCCGAAGAGCGCGACGTTCACGATCGATGAACTGAGCATCAACCGGGGCGAGAACCGCTTTGATTTCGTCG
ATAACGCCCGGGTCGTATCGGAGTTCGACGACATCTTCTCCCAGTCGTTCTCCTCCACTTCGCTTGCTGCGGCCGCCGCA
CAGGTGGTGACCCCGGTCGAAGAGGTTCCGCAGCCCCGGTTCGGGTTCCTCAAAAAACTTCAGGTCCCGAAAGTCGGCGT
CGCGGTCGAGGAGTACAACGCCACGCTCCACGGTCCGCTCGTCGATCTCGCGATGCGGCCGTCGCCGGGGGTTGAGGAGA
TCGAACTCTACCCGGTGAACGAACCTTATGCCTATGTCCGGGTGACCTACGACAGCACGACGCACGAGTACACCTATAAC
GTCATCGAGCCCGTGCTCACTCCCGGGGAGCAGATGCTCTTCGCGGAGATCAAAGAACGGCTTTTTGAGACGCTCAACAT
CACTTCCCGTGACCTCACCCGCGAAGAAGCCCGCACAGCGCTTCGCGATGCGGCGAACACGATCATCGCCGACTACGGGA
TCCGGCTCGACCCTCTCGGGCGCGAGAAGATCCTCTATCACGTCGAGAAGGAGTTCCTCGGCGACGGGCTGATCGACCCG
GTGATGCACGACAAGTACATCGAGGATATCTCCTGTGACGGTGTGGGCAGCGCTATATTCGTCTATCATACGACGTACGA
ATCGATGAAGACGAGCCTTATCTATCACGATCACGTGGAGCTCGACTCGTTCGTCACGAAACTCGCGCAGCGTGCCGGGA
AATACATCTCCATCGCCGAACCGATGCTGGACGCCACGATGAGCGACGGATCGCGTATCCAGATGACGCTCGGAGCGGAA
GTGACCGCACACGGCTCGACGTTCACGATCCGTAAGTTCCGGGAGGAGCCGATCACGCCGACGGATCTCATCGAGTGGCA
CACCTTCTCGCCGCTCGGGATCGCGTTCATCTGGCTCGCGGTCGAGAACGCCAAGTCCTGCATCTTTGCCGGCGGGACGG
CGTCCGGAAAGACGACGACCCTGAACGCCATATCGCTCTTCATCCCGCCGCTCGCAAAGATCGTCACCCTCGAGGATACC
CGGGAACTGAAACTGCCTCACCCGAACTGGATCCCGAGCATCACCCGCGACTCGTTCTCGCAGGACGGGCGGGGCGAGAT
CGATATGTACGAACTCCTGCGCGCCGCTCTCCGGCAGCGTCCGGAGTACATCCTGGTCGGTGAGGTCCGTGGCAAGGAGG
CCCTGACCCTCTTCCAGGCGATGAGCACCGGCCACGTCACCTACGCGACGATGCACGCCGACTCGGTGGCGAGCGCCGTC
CACCGTCTGGAGAACCCGCCGATCGACGTGCCGAGGAACATGCTCTCTGCCCTCTCCCTGATGTCCATCCAGGTGCAGGC
CCGTATCGGCGGTCAGCGGATCCGGCGGAACAAGCAGCTCATCGAGATCCTGGACATCGATCCCCGGACGAACGAACTGA
TCACGAACGAGGTCTTCCGGTGGCACCCGGCAACCGACGAGATCCGGTATTCCGGCAAATCCTACATCCTCGAGCAGATC
ATGGAAGACCGGGGCTGGAGCGAGGAGCGGATGCGCGAAGAGTTGAAACGGCGGCAGGAAGTCCTTGAATGGATGCGTAT
CAAGAAGATCCGCCACTTCAGGGACGTGAGTAAGGTCCTGATCTCCTACTTCCGCGATCCGGAGACGGTCGTCCAGCGGG
TGCGTGTCGACCTCTACGGGGAAGGTGGTTCCGCATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(404-660)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdL Methanoculleus thermophilus strain DSM 2373

77.748

95.032

0.739

Multiple sequence alignment