Detailed information
Bioinformatically predicted
Overview
| Name | epdK | Type | Machinery gene |
| Locus tag | MchiMG62_RS11785 | Genome accession | NZ_AP019781 |
| Coordinates | 2338726..2339775 (-) | Length | 349 a.a. |
| NCBI ID | WP_221057124.1 | Uniprot ID | - |
| Organism | Methanoculleus chikugoensis strain MG62 | ||
| Function | DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2333726..2344775
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MchiMG62_RS11755 (MchiMG62_23030) | - | 2333789..2334286 (+) | 498 | WP_244987706.1 | YkgJ family cysteine cluster protein | - |
| MchiMG62_RS11760 (MchiMG62_23040) | - | 2334279..2334539 (+) | 261 | WP_221057120.1 | hypothetical protein | - |
| MchiMG62_RS11765 (MchiMG62_23050) | - | 2334545..2334880 (-) | 336 | WP_221057121.1 | ribbon-helix-helix domain-containing protein | - |
| MchiMG62_RS11770 (MchiMG62_23060) | yciH | 2335010..2335315 (-) | 306 | WP_011844832.1 | stress response translation initiation inhibitor YciH | - |
| MchiMG62_RS11775 (MchiMG62_23070) | - | 2335357..2337003 (-) | 1647 | WP_221057122.1 | adenosylcobalamin-dependent ribonucleoside-diphosphate reductase | - |
| MchiMG62_RS11780 (MchiMG62_23080) | - | 2337063..2338529 (+) | 1467 | WP_221057123.1 | cobyric acid synthase | - |
| MchiMG62_RS11785 (MchiMG62_23090) | epdK | 2338726..2339775 (-) | 1050 | WP_221057124.1 | type II secretion system F family protein | Machinery gene |
| MchiMG62_RS11790 (MchiMG62_23100) | epdJ | 2339777..2340700 (-) | 924 | WP_221057125.1 | type II secretion system F family protein | Machinery gene |
| MchiMG62_RS11795 (MchiMG62_23110) | epdL | 2340697..2343054 (-) | 2358 | WP_244987707.1 | type II/IV secretion system ATPase subunit | Machinery gene |
| MchiMG62_RS11800 (MchiMG62_23120) | - | 2343140..2343778 (-) | 639 | WP_221057127.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 349 a.a. Molecular weight: 38701.96 Da Isoelectric Point: 5.2034
>NTDB_id=73968 MchiMG62_RS11785 WP_221057124.1 2338726..2339775(-) (epdK) [Methanoculleus chikugoensis strain MG62]
MGFKDLFNDFLNRKPTDGEMVPAVELESDRFVEQDQEIFSRVENRRKYQEGFYRFLKHPVRVMMEEPYTVLFVSVPAALL
LFIGGFVSVVTSYGIGALFTTTMIDDFFVFALLIAIVPLALLDFKEAWRISSVEASLPNFFRDVAGMNDSGMTLPHAIHI
VSEGEYGALTPHIRKLDTEMSWGVPFVEAIRRFGKAVKTPLAERSVDLIAHASSAGGDVSEVLRAAAHDAYEFFNLQSER
KNGMMIYMIIILMSFFVFLFVIGVLSGTFLTTMAEAGEAVAASGSSSAQSFMGNVDLFLYNRIFSHSALIQGLFSGLAAG
IMGEGRVVAGLKYSAIMVFIAWIAFRFII
MGFKDLFNDFLNRKPTDGEMVPAVELESDRFVEQDQEIFSRVENRRKYQEGFYRFLKHPVRVMMEEPYTVLFVSVPAALL
LFIGGFVSVVTSYGIGALFTTTMIDDFFVFALLIAIVPLALLDFKEAWRISSVEASLPNFFRDVAGMNDSGMTLPHAIHI
VSEGEYGALTPHIRKLDTEMSWGVPFVEAIRRFGKAVKTPLAERSVDLIAHASSAGGDVSEVLRAAAHDAYEFFNLQSER
KNGMMIYMIIILMSFFVFLFVIGVLSGTFLTTMAEAGEAVAASGSSSAQSFMGNVDLFLYNRIFSHSALIQGLFSGLAAG
IMGEGRVVAGLKYSAIMVFIAWIAFRFII
Nucleotide
Download Length: 1050 bp
>NTDB_id=73968 MchiMG62_RS11785 WP_221057124.1 2338726..2339775(-) (epdK) [Methanoculleus chikugoensis strain MG62]
ATGGGATTTAAAGACCTTTTCAACGATTTCTTAAACAGGAAACCCACGGATGGGGAGATGGTTCCGGCGGTCGAACTGGA
GTCCGACCGGTTCGTGGAACAGGACCAGGAGATCTTCAGCAGGGTTGAGAACAGGCGGAAGTACCAGGAAGGGTTTTACC
GGTTCCTCAAACACCCGGTCAGGGTGATGATGGAGGAGCCCTACACCGTCCTCTTCGTATCCGTTCCGGCCGCGCTTCTC
CTCTTCATCGGCGGGTTCGTGAGCGTGGTGACGTCCTACGGCATCGGCGCTCTCTTTACGACGACGATGATCGACGACTT
CTTCGTCTTCGCGCTCCTCATCGCCATCGTGCCGCTTGCCCTCCTCGATTTCAAGGAGGCGTGGCGCATATCGAGCGTCG
AGGCGTCGCTGCCGAACTTCTTCCGCGATGTTGCCGGGATGAACGATTCGGGCATGACGCTCCCGCACGCCATCCATATC
GTCTCGGAAGGCGAGTACGGGGCGCTTACCCCGCATATCCGCAAACTGGATACCGAGATGTCCTGGGGCGTCCCGTTCGT
GGAGGCCATCCGCCGGTTCGGGAAGGCCGTGAAAACCCCGCTCGCGGAGCGGAGCGTCGACCTGATCGCCCACGCGAGCT
CCGCCGGCGGCGACGTGAGCGAGGTGCTGCGGGCGGCGGCGCACGATGCATACGAGTTCTTCAACCTGCAGTCGGAGCGC
AAAAACGGGATGATGATCTACATGATCATCATCCTGATGTCGTTCTTTGTCTTCCTCTTCGTGATCGGGGTGCTCTCGGG
CACCTTCCTCACCACGATGGCGGAGGCGGGCGAGGCGGTGGCCGCGTCGGGTTCGAGCTCGGCCCAGTCGTTCATGGGCA
ACGTGGATCTCTTCCTCTACAACCGGATCTTCAGCCACTCCGCGCTTATCCAGGGATTGTTCTCAGGACTTGCAGCGGGT
ATCATGGGCGAAGGCCGGGTGGTCGCGGGGCTGAAGTACTCGGCGATCATGGTGTTTATCGCCTGGATTGCGTTCCGGTT
CATCATCTGA
ATGGGATTTAAAGACCTTTTCAACGATTTCTTAAACAGGAAACCCACGGATGGGGAGATGGTTCCGGCGGTCGAACTGGA
GTCCGACCGGTTCGTGGAACAGGACCAGGAGATCTTCAGCAGGGTTGAGAACAGGCGGAAGTACCAGGAAGGGTTTTACC
GGTTCCTCAAACACCCGGTCAGGGTGATGATGGAGGAGCCCTACACCGTCCTCTTCGTATCCGTTCCGGCCGCGCTTCTC
CTCTTCATCGGCGGGTTCGTGAGCGTGGTGACGTCCTACGGCATCGGCGCTCTCTTTACGACGACGATGATCGACGACTT
CTTCGTCTTCGCGCTCCTCATCGCCATCGTGCCGCTTGCCCTCCTCGATTTCAAGGAGGCGTGGCGCATATCGAGCGTCG
AGGCGTCGCTGCCGAACTTCTTCCGCGATGTTGCCGGGATGAACGATTCGGGCATGACGCTCCCGCACGCCATCCATATC
GTCTCGGAAGGCGAGTACGGGGCGCTTACCCCGCATATCCGCAAACTGGATACCGAGATGTCCTGGGGCGTCCCGTTCGT
GGAGGCCATCCGCCGGTTCGGGAAGGCCGTGAAAACCCCGCTCGCGGAGCGGAGCGTCGACCTGATCGCCCACGCGAGCT
CCGCCGGCGGCGACGTGAGCGAGGTGCTGCGGGCGGCGGCGCACGATGCATACGAGTTCTTCAACCTGCAGTCGGAGCGC
AAAAACGGGATGATGATCTACATGATCATCATCCTGATGTCGTTCTTTGTCTTCCTCTTCGTGATCGGGGTGCTCTCGGG
CACCTTCCTCACCACGATGGCGGAGGCGGGCGAGGCGGTGGCCGCGTCGGGTTCGAGCTCGGCCCAGTCGTTCATGGGCA
ACGTGGATCTCTTCCTCTACAACCGGATCTTCAGCCACTCCGCGCTTATCCAGGGATTGTTCTCAGGACTTGCAGCGGGT
ATCATGGGCGAAGGCCGGGTGGTCGCGGGGCTGAAGTACTCGGCGATCATGGTGTTTATCGCCTGGATTGCGTTCCGGTT
CATCATCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| epdK | Methanoculleus thermophilus strain DSM 2373 |
80.398 |
100 |
0.811 |