Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdJ   Type   Machinery gene
Locus tag   MchiMG62_RS11790 Genome accession   NZ_AP019781
Coordinates   2339777..2340700 (-) Length   307 a.a.
NCBI ID   WP_221057125.1    Uniprot ID   -
Organism   Methanoculleus chikugoensis strain MG62     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2334777..2345700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MchiMG62_RS11770 (MchiMG62_23060) yciH 2335010..2335315 (-) 306 WP_011844832.1 stress response translation initiation inhibitor YciH -
  MchiMG62_RS11775 (MchiMG62_23070) - 2335357..2337003 (-) 1647 WP_221057122.1 adenosylcobalamin-dependent ribonucleoside-diphosphate reductase -
  MchiMG62_RS11780 (MchiMG62_23080) - 2337063..2338529 (+) 1467 WP_221057123.1 cobyric acid synthase -
  MchiMG62_RS11785 (MchiMG62_23090) epdK 2338726..2339775 (-) 1050 WP_221057124.1 type II secretion system F family protein Machinery gene
  MchiMG62_RS11790 (MchiMG62_23100) epdJ 2339777..2340700 (-) 924 WP_221057125.1 type II secretion system F family protein Machinery gene
  MchiMG62_RS11795 (MchiMG62_23110) epdL 2340697..2343054 (-) 2358 WP_244987707.1 type II/IV secretion system ATPase subunit Machinery gene
  MchiMG62_RS11800 (MchiMG62_23120) - 2343140..2343778 (-) 639 WP_221057127.1 hypothetical protein -
  MchiMG62_RS11805 (MchiMG62_23130) - 2344150..2344956 (+) 807 WP_221057128.1 A24 family peptidase C-terminal domain-containing protein -
  MchiMG62_RS11810 (MchiMG62_23140) hisI 2344963..2345328 (+) 366 WP_221057129.1 phosphoribosyl-AMP cyclohydrolase -

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34128.89 Da        Isoelectric Point: 7.1571

>NTDB_id=73969 MchiMG62_RS11790 WP_221057125.1 2339777..2340700(-) (epdJ) [Methanoculleus chikugoensis strain MG62]
MNSYERFCFNLIGHNLKKKRGDYISLRNDLMGARMTTPFEAYLATAYVSSVAVGLVAAVLIGLLTYLLRVPDMIVYRGAV
PQVLYALNDYKMLLGTAAITIISLLVFGGLTYLIFLLYPGIKAGERRRNIDATLPYAINYVTAMSSAGITPDEVFRLLGQ
STIYGESAVEARYISRETDFFGKDLLEALRSVSQATPSERMREFLQGAVASISSGSNLTEYFRTKAHQYTLENNQQQKTF
LETLGLIAESYVTAMVAGMLFLIILQSVMTILSGDSNPFFLYIIIYLIVPFGSMMFVILISSMTPEV

Nucleotide


Download         Length: 924 bp        

>NTDB_id=73969 MchiMG62_RS11790 WP_221057125.1 2339777..2340700(-) (epdJ) [Methanoculleus chikugoensis strain MG62]
ATGAACAGTTACGAACGGTTCTGCTTCAATCTGATCGGGCACAACCTGAAGAAGAAACGGGGAGACTACATCAGCCTCCG
AAACGACCTGATGGGGGCCCGGATGACGACTCCGTTCGAGGCGTATCTCGCGACCGCGTACGTCTCCTCGGTCGCCGTGG
GGCTGGTCGCCGCCGTGCTGATCGGGCTTCTGACCTACCTCCTGCGGGTTCCCGATATGATCGTCTACCGCGGAGCGGTT
CCGCAGGTCCTGTACGCGTTGAACGACTACAAGATGCTGCTCGGCACCGCCGCCATCACGATCATCTCCCTCCTGGTCTT
CGGCGGGCTGACCTACCTGATCTTCCTCCTCTATCCCGGTATAAAGGCGGGAGAACGACGCCGGAACATCGATGCCACCC
TCCCGTACGCCATCAACTACGTCACCGCCATGTCTTCAGCCGGGATCACCCCCGACGAGGTCTTCCGGCTGCTCGGCCAG
AGCACGATATACGGCGAGAGCGCTGTCGAAGCGCGCTATATCTCCCGGGAGACCGACTTCTTCGGGAAGGATCTCCTCGA
GGCCCTGCGGTCGGTCTCGCAGGCGACGCCGAGTGAACGGATGCGGGAGTTTTTGCAGGGAGCCGTTGCGAGCATCTCCA
GCGGGAGCAACCTCACGGAGTACTTCCGCACCAAGGCTCACCAGTACACGCTCGAGAACAACCAGCAGCAGAAGACGTTC
TTAGAGACGCTCGGGCTGATCGCGGAGTCCTACGTCACCGCGATGGTCGCCGGCATGCTCTTCTTGATCATCCTGCAGTC
GGTGATGACGATCCTCTCGGGCGATTCAAACCCGTTCTTCCTCTACATCATCATCTACCTGATCGTCCCGTTCGGGAGCA
TGATGTTCGTCATCCTGATCAGTTCCATGACTCCGGAGGTGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(138-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdJ Methanoculleus thermophilus strain DSM 2373

89.902

100

0.899

Multiple sequence alignment