Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY1   Type   Machinery gene
Locus tag   OFU58_RS01820 Genome accession   NZ_CP107289
Coordinates   384683..388831 (+) Length   1382 a.a.
NCBI ID   WP_280586990.1    Uniprot ID   -
Organism   Acinetobacter pittii strain BM4623     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 379683..393831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OFU58_RS01790 (OFU58_01790) gmk 379965..380594 (-) 630 WP_002116973.1 guanylate kinase -
  OFU58_RS01795 (OFU58_01795) ispH 380717..381667 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  OFU58_RS01800 (OFU58_01800) fimU 381837..382310 (+) 474 WP_069037140.1 GspH/FimT family pseudopilin Machinery gene
  OFU58_RS01805 (OFU58_01805) pilV 382304..382864 (+) 561 WP_081313918.1 type IV pilus modification protein PilV Machinery gene
  OFU58_RS01810 (OFU58_01810) pilW 382864..383865 (+) 1002 WP_069037138.1 PilW family protein Machinery gene
  OFU58_RS01815 (OFU58_01815) pilX 383862..384671 (+) 810 WP_280586988.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OFU58_RS01820 (OFU58_01820) pilY1 384683..388831 (+) 4149 WP_280586990.1 PilC/PilY family type IV pilus protein Machinery gene
  OFU58_RS01825 (OFU58_01825) pilY2 388842..389324 (+) 483 WP_206218621.1 type IV pilin protein Machinery gene
  OFU58_RS01830 (OFU58_01830) pilE 389321..389743 (+) 423 WP_086394123.1 type IV pilin protein Machinery gene
  OFU58_RS01835 (OFU58_01835) rpsP 389894..390145 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  OFU58_RS01840 (OFU58_01840) rimM 390165..390713 (+) 549 WP_002116736.1 ribosome maturation factor RimM -
  OFU58_RS01845 (OFU58_01845) trmD 390756..391511 (+) 756 WP_046811879.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  OFU58_RS01850 (OFU58_01850) rplS 391731..392099 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  OFU58_RS01855 (OFU58_01855) lip 392152..393093 (-) 942 WP_080591800.1 triacylglycerol lipase -

Sequence

Protein


Download         Length: 1382 a.a.        Molecular weight: 148123.75 Da        Isoelectric Point: 6.9627

>NTDB_id=739329 OFU58_RS01820 WP_280586990.1 384683..388831(+) (pilY1) [Acinetobacter pittii strain BM4623]
MKLKLKNFKPNNLWYAICSSSVAFTWLMTSSVVQASDLQIYASPTAGKKTIVMMLDTSGSMGVNSSSNSINADYGVCSDR
TTVQTDSGGSGSYTYSRTYCSVAYSTSTSSNYQRLKDKCYNPNKNADGSYSARTDSLKCYDRISRLKDGMFAFLDSNNSS
LTNVRVGLGHYSVNGSGNAGKILVPAATLGATNSTQRNAIRTAVMGLTASGGTPTAAAYAEAAAYLMGTTTNAPVQIAVD
VYRKEETRSISSYQCPSSSYPYLRTNVAPPLCYERYESWRSQPYRGNSTEAIPVYGPIITTYYRCDSLNATDFSNEIQTC
RFNGWVSLGGTAPSNLAQDGYYTDGNNTIYYKQEMQLGANSYSGFSSSISDSKKADLLSYASPLPAAADRVSCDGQGVYI
LSDGEPTNKTDSTLNSVMNASLSSTNFDCAASGALSSTNDWHCMSNYAKRLFNGGVIQSIVANATNPVNVPIQTAFVGFG
NDFTSLGSSDVVNACKLTSRTQTDRAGDDACSPNQGTNAIANPGYGNGGFFATQTPQGVTDSVIAFINNLGAAPLAPLTT
GVISVPYDALNPKNLQEYGYLRAFEPNPANTYLTWRGNLKKYHVVLSGTNAGAFEANTGGLVYNATGAFRTGTKDYWNSS
TYNDGGKVFFGGSYAKVPLPIAGQNETRDEEGNITKYYYAVQTKIRNLFTDVSAVASDGSLTKLSTSGTNLLKIPATPPE
GTNPFDSVANTASYVLGKFNASTGQDILKAFPISLKLKILNYLGYSTDISATTLPSSLVTSNEPYLSMGGSIHSLPVQLT
YNGTLDENGNLTSAREQSILYGTMEGGLHIVDASTGVEQMAFVPADILNNPVASKALVVGQSDASAPAHGMDGAWISDPA
YSITTTVSGSSAVSKVTAKQMNIYGGMRMGGSSYYGLNVLNPASPKLLFRVGADQTDYSRMGQSWSKPVLANIRYNGVIK
RVMIVGGGYDQCYENPNITLSNSCFTNGKAKGNAVYIIDAKTGERLWWTSDTGSNIDNSNMKHSIVSRISTLDRDADGLV
DHLYFGDLGGQIFRIDLNNNQTKTNSTYSSFGIRVVRLANLATNDSTYDASNDYTAGNAPRFYEPPTVTIHDYGIRTFIT
VGIASGDRSTPLDVYPLTGREGMSPSTALSGRPVNNVYGIIDKDFIKKNLMSLADNQLETKDITRSTLRKNPQILRSGET
RVAQIFFPNTGTGQSGWYRSLSSMSDGTEKANNSFRIKGGLKAFEEPMAITGTLIVPVYDPQGTGIVAADPCLPRVVGET
DQQTFCLPFGACLNSDGSIDQNKENHSGFETQTGNTCPVGVSECNKDVIGSGIRGVTFVPTEDNPPATNSCGKLKLSGNE
QGTGQWQCTSHLVPTRWYERYR

Nucleotide


Download         Length: 4149 bp        

>NTDB_id=739329 OFU58_RS01820 WP_280586990.1 384683..388831(+) (pilY1) [Acinetobacter pittii strain BM4623]
GTGAAACTAAAATTGAAGAATTTTAAGCCAAATAATTTATGGTATGCCATCTGTTCGAGTTCGGTTGCTTTTACATGGCT
AATGACAAGCTCCGTGGTGCAGGCGAGTGATTTACAAATTTATGCTTCACCTACAGCGGGTAAAAAAACCATTGTGATGA
TGTTGGATACCTCCGGTTCAATGGGGGTAAATAGTAGTAGTAATTCAATTAATGCAGATTATGGAGTGTGTTCAGATCGT
ACAACTGTGCAAACTGATAGTGGAGGGAGCGGGTCGTATACATATTCCAGAACGTATTGCTCGGTGGCTTATTCGACTTC
AACTTCGTCGAATTATCAAAGATTAAAGGACAAGTGTTACAATCCTAATAAAAATGCTGATGGTAGTTATAGCGCTCGAA
CAGATTCCTTGAAATGCTATGATCGAATATCAAGGCTAAAGGATGGTATGTTTGCATTTTTGGATAGTAATAACTCCAGC
TTAACAAATGTCCGGGTGGGATTGGGTCATTATTCCGTCAATGGGTCAGGAAATGCAGGAAAGATATTAGTACCAGCCGC
TACTCTTGGTGCTACTAATTCAACCCAAAGGAATGCTATACGTACAGCTGTGATGGGGCTGACTGCAAGTGGAGGAACAC
CTACAGCCGCTGCATATGCTGAAGCAGCTGCATATTTGATGGGAACAACAACTAACGCACCAGTACAAATTGCAGTTGAT
GTTTATAGAAAGGAAGAAACAAGAAGTATAAGTAGTTATCAATGTCCTAGCAGCAGCTATCCTTATTTGAGAACCAATGT
GGCACCGCCGCTTTGCTATGAAAGATATGAGTCTTGGAGATCTCAACCATATCGAGGTAATAGTACCGAAGCTATACCAG
TATATGGTCCTATTATAACTACTTACTATAGATGTGATAGCTTGAATGCTACAGATTTTAGTAATGAAATACAGACTTGT
CGTTTTAATGGTTGGGTTTCTTTAGGGGGAACGGCTCCATCTAATCTTGCTCAAGATGGTTATTATACTGACGGAAACAA
TACTATTTATTACAAACAGGAAATGCAACTAGGAGCTAACTCGTATAGTGGTTTTAGTAGTTCTATTTCTGACTCTAAAA
AAGCAGACTTACTTAGTTACGCCTCACCACTGCCAGCGGCTGCTGATCGAGTAAGTTGTGATGGTCAAGGAGTTTATATT
CTATCTGATGGTGAGCCGACAAATAAGACTGATTCGACCCTTAATTCTGTTATGAATGCTAGTCTGAGTAGTACGAATTT
TGATTGCGCTGCATCAGGTGCACTAAGTAGTACTAACGATTGGCATTGTATGAGTAACTATGCGAAAAGACTTTTTAATG
GTGGTGTAATCCAAAGCATAGTTGCTAATGCGACGAATCCTGTCAATGTTCCCATACAAACTGCTTTTGTGGGTTTTGGT
AATGACTTTACAAGTTTAGGATCTAGTGATGTCGTTAATGCATGTAAATTGACATCCCGAACTCAAACAGATCGCGCAGG
TGATGATGCTTGTTCGCCGAATCAAGGAACAAACGCAATTGCTAATCCAGGTTATGGTAATGGAGGGTTTTTTGCAACGC
AAACACCACAAGGTGTGACTGATAGTGTTATCGCATTTATTAATAACTTGGGTGCAGCACCTTTAGCACCGTTAACAACA
GGTGTGATCTCTGTTCCTTATGATGCACTAAATCCTAAAAATTTACAGGAATATGGTTACTTACGTGCTTTTGAGCCAAA
CCCGGCTAACACCTACTTAACATGGCGAGGAAATTTAAAGAAATATCATGTTGTTTTATCGGGAACAAATGCTGGTGCTT
TTGAAGCTAATACTGGTGGGTTGGTTTATAACGCAACTGGGGCATTTAGAACGGGTACAAAAGATTATTGGAATAGCTCT
ACTTATAATGATGGAGGTAAAGTCTTTTTTGGCGGTTCATATGCAAAAGTTCCTTTACCAATTGCTGGACAAAATGAAAC
ACGCGATGAAGAAGGAAATATCACAAAATATTATTACGCAGTACAAACTAAAATCCGCAACTTATTTACTGATGTTTCCG
CCGTCGCATCAGATGGTAGCTTAACGAAGCTATCAACTTCTGGAACTAATTTGCTAAAAATTCCAGCTACTCCACCAGAA
GGAACTAATCCTTTTGATAGTGTGGCTAATACAGCAAGTTATGTTTTAGGAAAATTTAATGCATCAACGGGACAAGATAT
TTTAAAAGCTTTCCCAATTAGCTTGAAATTAAAAATATTAAATTATCTAGGTTACTCAACTGATATTAGCGCTACGACTT
TACCTTCTTCATTAGTTACATCGAATGAACCATATTTATCGATGGGCGGTAGTATTCACTCTTTACCGGTACAGCTTACC
TATAATGGAACATTAGATGAAAATGGGAATTTAACATCTGCGCGTGAACAATCCATTCTCTATGGAACGATGGAAGGTGG
TCTGCATATTGTGGATGCCTCAACTGGTGTAGAACAAATGGCTTTCGTTCCCGCTGATATATTAAATAATCCAGTTGCAT
CAAAAGCTTTAGTGGTTGGTCAAAGTGATGCTTCAGCCCCTGCTCACGGTATGGATGGAGCTTGGATATCTGACCCTGCA
TATAGTATTACTACAACGGTAAGCGGTAGTTCAGCAGTATCAAAAGTAACTGCAAAGCAAATGAATATTTATGGTGGTAT
GCGAATGGGGGGCAGCAGTTATTATGGCTTAAATGTCTTAAATCCTGCTTCACCTAAGCTCCTCTTTAGAGTAGGAGCAG
ACCAAACTGATTATAGTCGTATGGGGCAGAGTTGGTCTAAACCTGTACTTGCAAATATACGTTATAACGGGGTTATTAAA
CGCGTTATGATTGTTGGTGGTGGCTACGACCAATGTTATGAAAACCCGAATATTACCTTGAGTAATTCTTGCTTTACGAA
TGGAAAAGCAAAAGGGAATGCTGTTTATATTATTGATGCTAAAACTGGGGAACGCTTATGGTGGACTAGTGATACAGGCT
CTAATATAGATAACTCTAATATGAAGCACAGTATTGTTAGTCGCATTAGTACTTTAGATCGAGATGCTGATGGTTTAGTC
GACCATTTATATTTTGGCGATTTAGGCGGACAAATTTTCCGTATCGATCTTAATAATAACCAGACAAAAACAAATTCAAC
TTATAGTAGTTTCGGTATTCGAGTTGTTCGATTAGCCAATTTGGCAACAAATGACTCAACTTATGATGCTTCGAATGATT
ATACCGCTGGGAATGCGCCGCGTTTTTATGAACCGCCAACAGTGACAATTCATGATTATGGAATCCGCACTTTTATTACT
GTAGGCATTGCTTCAGGGGACCGCAGTACACCGTTAGATGTTTACCCCCTTACAGGCCGTGAGGGAATGTCACCGAGCAC
CGCATTAAGCGGAAGACCTGTAAACAATGTCTATGGGATTATCGATAAAGACTTTATCAAAAAGAATTTAATGTCTTTAG
CTGATAACCAACTTGAAACAAAAGATATTACTCGATCGACGCTTCGAAAAAATCCACAAATTTTACGGTCTGGGGAAACA
CGAGTAGCACAGATTTTCTTTCCAAACACTGGGACGGGGCAAAGTGGTTGGTATCGCTCACTTTCTAGTATGAGCGATGG
TACCGAGAAAGCTAATAATAGTTTCCGTATTAAAGGAGGTCTTAAAGCTTTTGAAGAGCCTATGGCAATTACAGGGACTT
TAATTGTGCCTGTTTATGATCCACAGGGAACAGGTATTGTAGCGGCAGACCCATGTTTACCCCGTGTAGTAGGTGAAACT
GACCAGCAGACGTTCTGTTTACCATTTGGCGCCTGCCTTAATTCTGATGGGTCAATCGATCAAAATAAAGAGAATCACAG
TGGGTTTGAAACACAAACGGGGAATACCTGCCCAGTAGGAGTTTCTGAATGTAATAAAGACGTTATTGGCTCTGGTATTC
GTGGCGTAACATTTGTACCAACGGAGGATAACCCACCTGCGACTAATAGTTGTGGGAAATTAAAGCTGTCTGGTAATGAG
CAAGGGACTGGGCAGTGGCAATGTACGAGTCATTTAGTTCCTACGCGCTGGTATGAGCGTTATCGCTAA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(813-1063)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY1 Acinetobacter baumannii D1279779

75.868

91.751

0.696