Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   OFU58_RS01825 Genome accession   NZ_CP107289
Coordinates   388842..389324 (+) Length   160 a.a.
NCBI ID   WP_206218621.1    Uniprot ID   -
Organism   Acinetobacter pittii strain BM4623     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 383842..394324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OFU58_RS01815 (OFU58_01815) pilX 383862..384671 (+) 810 WP_280586988.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OFU58_RS01820 (OFU58_01820) pilY1 384683..388831 (+) 4149 WP_280586990.1 PilC/PilY family type IV pilus protein Machinery gene
  OFU58_RS01825 (OFU58_01825) pilY2 388842..389324 (+) 483 WP_206218621.1 type IV pilin protein Machinery gene
  OFU58_RS01830 (OFU58_01830) pilE 389321..389743 (+) 423 WP_086394123.1 type IV pilin protein Machinery gene
  OFU58_RS01835 (OFU58_01835) rpsP 389894..390145 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  OFU58_RS01840 (OFU58_01840) rimM 390165..390713 (+) 549 WP_002116736.1 ribosome maturation factor RimM -
  OFU58_RS01845 (OFU58_01845) trmD 390756..391511 (+) 756 WP_046811879.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  OFU58_RS01850 (OFU58_01850) rplS 391731..392099 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  OFU58_RS01855 (OFU58_01855) lip 392152..393093 (-) 942 WP_080591800.1 triacylglycerol lipase -
  OFU58_RS01860 (OFU58_01860) - 393209..394240 (-) 1032 WP_280587001.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17489.74 Da        Isoelectric Point: 8.4721

>NTDB_id=739330 OFU58_RS01825 WP_206218621.1 388842..389324(+) (pilY2) [Acinetobacter pittii strain BM4623]
MNKYYIQRFNQGVTLIELMVVIVIVAILASIAIPSYQSYSRRATASAAKGEILKLAEQLERHKSKNFTYRGFTTTSVTLP
RGGYTIEISDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGTVTCNVCETNSESWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=739330 OFU58_RS01825 WP_206218621.1 388842..389324(+) (pilY2) [Acinetobacter pittii strain BM4623]
ATGAATAAATACTATATCCAACGGTTTAATCAGGGTGTTACCTTGATTGAACTCATGGTTGTCATCGTGATTGTGGCTAT
TCTTGCTTCGATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCGACTGCCTCTGCTGCTAAAGGTGAAATTCTAA
AATTGGCAGAACAATTGGAACGGCATAAATCCAAGAACTTTACTTATAGAGGATTTACCACCACATCTGTAACTTTGCCA
CGGGGTGGTTATACGATTGAAATTAGTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGCCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAACAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAGTTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

93.125

100

0.931
  comE Acinetobacter baylyi ADP1

40.678

100

0.45