Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   OFU58_RS01815 Genome accession   NZ_CP107289
Coordinates   383862..384671 (+) Length   269 a.a.
NCBI ID   WP_280586988.1    Uniprot ID   -
Organism   Acinetobacter pittii strain BM4623     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 378862..389671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OFU58_RS01780 (OFU58_01780) - 379420..379575 (-) 156 Protein_342 hypothetical protein -
  OFU58_RS01785 (OFU58_01785) rpoZ 379614..379892 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  OFU58_RS01790 (OFU58_01790) gmk 379965..380594 (-) 630 WP_002116973.1 guanylate kinase -
  OFU58_RS01795 (OFU58_01795) ispH 380717..381667 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  OFU58_RS01800 (OFU58_01800) fimU 381837..382310 (+) 474 WP_069037140.1 GspH/FimT family pseudopilin Machinery gene
  OFU58_RS01805 (OFU58_01805) pilV 382304..382864 (+) 561 WP_081313918.1 type IV pilus modification protein PilV Machinery gene
  OFU58_RS01810 (OFU58_01810) pilW 382864..383865 (+) 1002 WP_069037138.1 PilW family protein Machinery gene
  OFU58_RS01815 (OFU58_01815) pilX 383862..384671 (+) 810 WP_280586988.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OFU58_RS01820 (OFU58_01820) pilY1 384683..388831 (+) 4149 WP_280586990.1 PilC/PilY family type IV pilus protein Machinery gene
  OFU58_RS01825 (OFU58_01825) pilY2 388842..389324 (+) 483 WP_206218621.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 28435.17 Da        Isoelectric Point: 6.8454

>NTDB_id=739328 OFU58_RS01815 WP_280586988.1 383862..384671(+) (pilX) [Acinetobacter pittii strain BM4623]
MTHLIHKSRSKEKGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNPTTLTNITNVI
GAALKEHESNPGAEYNFCYKPVSTATNFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSVPTD
AASDIPGSNLPRGTNTSEGTQLPKSMLSTQRIRVITTAFLPAYASTSIDTLQSDCLSTSSAKISDNFDTALTAKQTLAEC
LANHNVPFSTQVQEFNYTNKLTQITAPGS

Nucleotide


Download         Length: 810 bp        

>NTDB_id=739328 OFU58_RS01815 WP_280586988.1 383862..384671(+) (pilX) [Acinetobacter pittii strain BM4623]
ATGACCCATTTAATTCATAAGAGTAGATCTAAGGAAAAAGGGGCAACCCTTATTGTTGTGCTTATTATTTTATTGATTGT
TATTTCTGTAGGTGTTTTAGCAATAAGAGTGGCTATTGTTTCTTTAAAAGTTGCTACCAATAGTCAAGTGAGCCAATTAA
ATTTTCAGTCATCTGACACACCTTTAGAACTCATTGTGCAGATGAATCCTACCACCCTAACTAATATTACCAATGTGATT
GGTGCCGCGCTTAAAGAGCATGAAAGTAATCCTGGTGCGGAATACAACTTTTGTTATAAGCCTGTTTCTACAGCAACAAA
TTTTGCTCAGACCAGAGGCGCAAGTTTACTTCGAGCAGGAAGTGCTAATAATGCGGTTGTTGAAGATGGCGGAGTGGCGG
GTTTCTGCGATTTAACAAGTGACTATGGTAGTAATCGTCAAGCAGTGGTTACCCAAGTTGCTGTAAGTGTTCCAACAGAT
GCTGCTAGCGATATTCCTGGCTCAAATTTACCACGAGGAACAAACACCTCGGAAGGTACGCAACTACCTAAAAGCATGTT
GTCTACACAACGTATTCGAGTGATTACAACTGCTTTTTTGCCAGCCTATGCTTCTACCTCTATTGATACTTTACAAAGCG
ATTGCTTAAGCACAAGTTCGGCAAAAATTAGCGACAATTTTGATACCGCATTAACGGCTAAACAAACATTGGCGGAGTGT
TTGGCAAATCATAACGTGCCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAACTCACTCAAATTACGGCACC
AGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

90.074

100

0.911