Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   OFU58_RS01800 Genome accession   NZ_CP107289
Coordinates   381837..382310 (+) Length   157 a.a.
NCBI ID   WP_069037140.1    Uniprot ID   A0AAW8QET8
Organism   Acinetobacter pittii strain BM4623     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 376837..387310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OFU58_RS01775 (OFU58_01775) spoT 377299..379404 (-) 2106 WP_130119881.1 HD domain-containing protein -
  OFU58_RS01780 (OFU58_01780) - 379420..379575 (-) 156 Protein_342 hypothetical protein -
  OFU58_RS01785 (OFU58_01785) rpoZ 379614..379892 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  OFU58_RS01790 (OFU58_01790) gmk 379965..380594 (-) 630 WP_002116973.1 guanylate kinase -
  OFU58_RS01795 (OFU58_01795) ispH 380717..381667 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  OFU58_RS01800 (OFU58_01800) fimU 381837..382310 (+) 474 WP_069037140.1 GspH/FimT family pseudopilin Machinery gene
  OFU58_RS01805 (OFU58_01805) pilV 382304..382864 (+) 561 WP_081313918.1 type IV pilus modification protein PilV Machinery gene
  OFU58_RS01810 (OFU58_01810) pilW 382864..383865 (+) 1002 WP_069037138.1 PilW family protein Machinery gene
  OFU58_RS01815 (OFU58_01815) pilX 383862..384671 (+) 810 WP_280586988.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16884.54 Da        Isoelectric Point: 9.2843

>NTDB_id=739325 OFU58_RS01800 WP_069037140.1 381837..382310(+) (fimU) [Acinetobacter pittii strain BM4623]
MRGIIPQDGFTLVELMVTIAVMAIIAMMAAPSMSNLLESKRLDGNQRDLINTLSEAKSQAILGRQNVSINLNSTASNTPT
SLNWKADSNNSLELKNIAANGTQSSLTATTLTFNANGVITNITQDTLLSICNSKINKKKILILTKLGTLIFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=739325 OFU58_RS01800 WP_069037140.1 381837..382310(+) (fimU) [Acinetobacter pittii strain BM4623]
ATGAGGGGAATTATTCCGCAAGACGGGTTCACCTTGGTTGAGCTTATGGTGACGATTGCGGTTATGGCTATTATCGCGAT
GATGGCTGCACCATCTATGTCGAATTTATTAGAAAGCAAACGATTAGATGGAAACCAGCGAGATCTAATAAATACTTTAT
CGGAAGCAAAGAGCCAAGCCATACTTGGTCGACAGAACGTTTCTATTAATCTGAATTCAACAGCTTCAAATACTCCCACT
TCCTTGAATTGGAAAGCTGATTCCAATAACAGTCTTGAGCTTAAAAATATCGCTGCTAACGGTACGCAGAGTTCGTTAAC
AGCGACGACTTTAACTTTTAATGCGAATGGGGTGATAACCAATATCACCCAAGACACACTTTTATCTATCTGTAATTCAA
AAATAAATAAAAAGAAAATTCTTATTTTAACAAAGCTTGGCACATTAATTTTTAAAGCTGAGGAGACATGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

89.172

100

0.892