Detailed information NTG0739319

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: OFU58_RS01170
• Genome accession: NZ_CP107289
• Coordinates: 261543..262121 (+)
• Length: 192 a.a.
• NCBI ID: WP_068541458.1
• Uniprot ID: -
• Organism: Acinetobacter pittii strain BM4623
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	249108..261338	261543..262121	flank	205

Gene organization within MGE regions

Location: 249108..262121

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OFU58_RS01100 (OFU58_01100)	sul2	250288..251103 (+)	816	WP_001043260.1	sulfonamide-resistant dihydropteroate synthase Sul2	-
OFU58_RS01105 (OFU58_01105)	-	251147..251386 (+)	240	WP_348519950.1	tyrosine-type recombinase/integrase	-
OFU58_RS01110 (OFU58_01110)	-	251504..252670 (+)	1167	WP_008651082.1	tetracycline-inactivating monooxygenase Tet(X2)	-
OFU58_RS01115 (OFU58_01115)	-	252914..253744 (-)	831	Protein_217	IS91-like element ISVsa3 family transposase	-
OFU58_RS01120 (OFU58_01120)	-	253808..254512 (+)	705	WP_001067784.1	IS6-like element IS1006 family transposase	-
OFU58_RS01125 (OFU58_01125)	-	254565..254744 (+)	180	Protein_219	helix-turn-helix domain-containing protein	-
OFU58_RS01130 (OFU58_01130)	-	254959..255837 (-)	879	WP_067732190.1	DMT family transporter	-
OFU58_RS01135 (OFU58_01135)	-	255930..256475 (+)	546	WP_223129313.1	XRE family transcriptional regulator	-
OFU58_RS01140 (OFU58_01140)	-	256595..256963 (-)	369	Protein_222	IS1-like element ISAba3 family transposase	-
OFU58_RS01145 (OFU58_01145)	-	257044..257886 (+)	843	WP_002002480.1	carbapenem-hydrolyzing class D beta-lactamase OXA-58	-
OFU58_RS01150 (OFU58_01150)	-	257977..258399 (+)	423	Protein_224	IS1-like element ISAba3 family transposase	-
OFU58_RS01155 (OFU58_01155)	-	258507..259343 (-)	837	WP_000480968.1	aminoglycoside O-phosphotransferase APH(6)-Id	-
OFU58_RS01160 (OFU58_01160)	aph(3'')-Ib	259343..260146 (-)	804	WP_001082319.1	aminoglycoside O-phosphotransferase APH(3'')-Ib	-
OFU58_RS01165 (OFU58_01165)	-	260248..261338 (+)	1091	WP_280586825.1	IS4-like element ISAba1 family transposase	-
OFU58_RS01170 (OFU58_01170)	ssb	261543..262121 (+)	579	WP_068541458.1	single-stranded DNA-binding protein	Machinery gene

Sequence

Protein

• Length: 192 a.a.
• Molecular weight: 20869.54 Da
• Isoelectric Point: 5.2494

>NTDB_id=739319 OFU58_RS01170 WP_068541458.1 261543..262121(+) (ssb) [Acinetobacter pittii strain BM4623]
MSNVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEGSLR
TRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYGQNSGGYGNQGGFG
NGGSNPQAGGFAPKAPQQPASAPADLDDDLPF

Nucleotide

• Length: 579 bp

>NTDB_id=739319 OFU58_RS01170 WP_068541458.1 261543..262121(+) (ssb) [Acinetobacter pittii strain BM4623]
ATGAGCAATGTCATCTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTCGTTGACCCA
ATTTTCAATCGCGACAAGTGAAGCTTGGACTGATAAAAATACTGGTGAACGTAAAGAACAAACAGAATGGCACCGTATTG
TTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTCTTGCGTAAAGGTTCTAAGGTTTATATTGAAGGTTCACTACGT
ACACGTCAGTGGACAGACCAAAATGGCCAAGAGCGTTACACTACAGAAATCCGTGGCGACCAGATGCAAATGTTAGATGC
TCGTCAACAAGGTGAACAAGGTTTCGCTGGCGGTAATGATTTTAACCAACCACGTTTTAACGCACCTCAACAAGGTGGTA
ATGGTTATCAAAATAATAACAACCAAGGTGGCGGCTATGGCCAAAACAGCGGTGGTTATGGTAACCAAGGTGGTTTCGGT
AATGGTGGAAGCAACCCTCAAGCGGGTGGTTTTGCGCCTAAAGCGCCACAACAACCAGCTTCTGCACCAGCTGATTTAGA
CGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (1-105)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Glaesserella parasuis strain SC1401	50.754	100	0.526
ssb	Vibrio cholerae strain A1552	42.424	100	0.437
ssb	Neisseria meningitidis MC58	38.384	100	0.396
ssb	Neisseria gonorrhoeae MS11	36.869	100	0.38