Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OFU58_RS01015 Genome accession   NZ_CP107289
Coordinates   230657..231244 (+) Length   195 a.a.
NCBI ID   WP_009386623.1    Uniprot ID   A0AB37TLI7
Organism   Acinetobacter pittii strain BM4623     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 225657..236244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OFU58_RS01000 (OFU58_01000) - 225956..228022 (+) 2067 WP_267570614.1 hypothetical protein -
  OFU58_RS01005 (OFU58_01005) - 228036..229823 (+) 1788 WP_272284969.1 site-specific integrase -
  OFU58_RS01010 (OFU58_01010) - 229978..230586 (+) 609 WP_267570575.1 hypothetical protein -
  OFU58_RS01015 (OFU58_01015) ssb 230657..231244 (+) 588 WP_009386623.1 single-stranded DNA-binding protein Machinery gene
  OFU58_RS01020 (OFU58_01020) - 231742..232812 (+) 1071 WP_057082469.1 ImmA/IrrE family metallo-endopeptidase -
  OFU58_RS01025 (OFU58_01025) - 233042..233170 (+) 129 WP_280586808.1 hypothetical protein -
  OFU58_RS01030 (OFU58_01030) - 233297..234331 (+) 1035 WP_057082470.1 nucleotidyltransferase -
  OFU58_RS01035 (OFU58_01035) - 234328..236061 (+) 1734 WP_272284965.1 ThiF family adenylyltransferase -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21433.19 Da        Isoelectric Point: 6.4830

>NTDB_id=739318 OFU58_RS01015 WP_009386623.1 230657..231244(+) (ssb) [Acinetobacter pittii strain BM4623]
MARGSVNKVILIGSLGKDPETKSFPNGGSLTQFSIATSDSWVDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYI
EGSLRTRQWTDQNGQERYTTEIRGEQMQMLDSNRQQGEQGQGGGEFNQPRFNNNQGGYNNNQNQGGYGNQGGYGNNQPAQ
GNSYGNNNPGGFAPKQQPAPTPAPAAADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=739318 OFU58_RS01015 WP_009386623.1 230657..231244(+) (ssb) [Acinetobacter pittii strain BM4623]
ATGGCTAGAGGTTCGGTTAATAAGGTCATCTTGATTGGTAGTTTAGGAAAAGACCCAGAGACCAAAAGTTTCCCAAATGG
CGGTTCACTTACACAGTTTTCAATAGCTACTAGTGATTCTTGGGTAGATAAAAATACTGGTGAGCGTAAAGAGCAAACGG
AATGGCATCGTATTGTTTTGCATAACCGTTTAGGTGAAATTGCCCAGCAATTTTTACGTAAAGGTTCTAAAGTATATATT
GAGGGGTCATTACGTACCCGTCAGTGGACAGACCAAAATGGTCAAGAGCGTTACACTACTGAAATTCGTGGTGAACAAAT
GCAGATGCTTGACAGCAACCGTCAACAAGGTGAGCAAGGTCAAGGTGGTGGTGAATTTAATCAACCACGTTTTAACAACA
ATCAAGGTGGTTATAATAATAACCAAAACCAAGGCGGCTACGGCAACCAAGGTGGTTATGGTAATAATCAACCGGCTCAA
GGCAATAGCTATGGCAACAATAACCCGGGTGGTTTTGCGCCGAAACAACAGCCTGCACCGACACCAGCACCAGCTGCTGC
AGACTTAGATGACGATCTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.785

97.949

0.497
  ssb Vibrio cholerae strain A1552

45

100

0.462
  ssb Neisseria meningitidis MC58

39.216

100

0.41
  ssb Neisseria gonorrhoeae MS11

39.216

100

0.41