Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OF379_RS22185 Genome accession   NZ_CP107284
Coordinates   4595523..4596059 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain SW4848     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4590523..4601059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OF379_RS22165 (OF379_22165) soxR 4592250..4592714 (-) 465 WP_000412424.1 redox-sensitive transcriptional activator SoxR -
  OF379_RS22170 (OF379_22170) soxS 4592800..4593123 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  OF379_RS22175 (OF379_22175) pdeC 4593126..4594712 (-) 1587 WP_000019572.1 c-di-GMP phosphodiesterase PdeC -
  OF379_RS22180 (OF379_22180) yjcB 4595142..4595423 (+) 282 WP_001295689.1 YjcB family protein -
  OF379_RS22185 (OF379_22185) ssb 4595523..4596059 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  OF379_RS22190 (OF379_22190) uvrA 4596314..4599136 (+) 2823 WP_000357763.1 excinuclease ABC subunit UvrA -
  OF379_RS22195 (OF379_22195) yjbR 4599171..4599527 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  OF379_RS22200 (OF379_22200) yjbQ 4599531..4599947 (-) 417 WP_000270370.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  OF379_RS22205 (OF379_22205) aphA 4600058..4600771 (-) 714 WP_001468912.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=739312 OF379_RS22185 WP_000168305.1 4595523..4596059(-) (ssb) [Escherichia coli strain SW4848]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=739312 OF379_RS22185 WP_000168305.1 4595523..4596059(-) (ssb) [Escherichia coli strain SW4848]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCACCGTCTAACGAGCCGCCGATGGATTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489