Detailed information NTG0073924

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: FOY54_RS02200
• Genome accession: NZ_AP019774
• Coordinates: 419120..420322 (+)
• Length: 400 a.a.
• NCBI ID: WP_064430194.1
• Uniprot ID: A0A6J4CWE4
• Organism: Helicobacter suis strain SNTW101c
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 414120..425322

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FOY54_RS02185	-	416163..416297 (+)	135	WP_000738747.1	hypothetical protein	-
FOY54_RS02190 (SNTW_04410)	-	416290..417459 (+)	1170	WP_064430196.1	type IV secretion system protein	-
FOY54_RS02195 (SNTW_04420)	-	417456..419123 (+)	1668	WP_064430195.1	TrbG/VirB9 family P-type conjugative transfer protein	-
FOY54_RS02200 (SNTW_04430)	comB10	419120..420322 (+)	1203	WP_064430194.1	DNA type IV secretion system protein ComB10	Machinery gene
FOY54_RS02205 (SNTW_04440)	-	420306..422555 (+)	2250	WP_064430193.1	collagen-like protein	-
FOY54_RS02210 (SNTW_04450)	-	422568..423545 (+)	978	WP_064430192.1	hypothetical protein	-
FOY54_RS02215 (SNTW_04460)	-	423563..423817 (+)	255	WP_176485824.1	hypothetical protein	-
FOY54_RS02220 (SNTW_04470)	-	423822..424766 (+)	945	WP_006564526.1	CpaF/VirB11 family protein	-
FOY54_RS02225 (SNTW_04480)	-	424763..425282 (+)	520	Protein_450	replication regulatory RepB family protein	-

Sequence

Protein

• Length: 400 a.a.
• Molecular weight: 44890.74 Da
• Isoelectric Point: 10.0240

>NTDB_id=73924 FOY54_RS02200 WP_064430194.1 419120..420322(+) (comB10) [Helicobacter suis strain SNTW101c]
MKQSLLKKIGLVIGGFVVLMALGLLANKGSNNNNKEEIYSIEESKFPLSDYFFEEVKEEPKKEENPKTITTPQPIAPTTT
NVSTNPIITDYSHLNSNLNKQNDTITHLQQVLQSPPKMKPKLKHTKEQLEFLNTRLKPLEPTKPAIKPETEYGVDSFSNL
KYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNNQIGQYRLNIA
WTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANRQNRKGDGNPFFGDYLL
MQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFITPNLDIFIPKPKDGEVLAEFFKEKKPLIKKSNEEVNNEEEI

Nucleotide

• Length: 1203 bp

>NTDB_id=73924 FOY54_RS02200 WP_064430194.1 419120..420322(+) (comB10) [Helicobacter suis strain SNTW101c]
ATGAAACAATCCTTACTTAAAAAAATCGGCTTAGTTATAGGGGGCTTTGTTGTTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGTTCAAACAATAACAATAAAGAAGAAATTTACAGCATAGAAGAAAGTAAATTCCCCTTAAGCGATTATTTCTTTG
AAGAAGTCAAAGAAGAACCAAAAAAAGAAGAAAACCCCAAAACAATAACTACGCCACAACCTATAGCTCCAACTACTACC
AATGTTTCAACTAATCCTATCATTACAGATTATAGTCATCTTAACAGCAATCTCAACAAGCAAAATGACACCATCACGCA
TTTGCAACAAGTTTTACAAAGCCCCCCTAAAATGAAACCTAAATTAAAGCATACTAAAGAGCAATTAGAGTTTTTAAACA
CACGCCTTAAACCTTTAGAACCAACTAAACCAGCCATTAAGCCTGAGACGGAATATGGCGTGGATAGTTTTAGCAATTTA
AAATATAAAGACATCGGCACTAATGAGCATAAGCTCTTAAGAACTATAACCGCTGATAGAATGATACCAGCCTTTTTAAT
CACGCCTATTAGTTCTCAAATCGCTGGAAAAGTAACCGCTCAAGTAGAGAGTGATATTTTTGCTTCTATGGGTAGAGCGG
TGTTAATTCCTAAAGGCTCTAAGGTTATAGGCTATTACAATAATAACAATCAAATTGGACAATACCGCCTTAACATTGCT
TGGACTAGAATTATCACGCCTCAAGGCATAAACATCATGCTCACTAACGCAAGGGGGGCTGATGTGAAGGGTTATAATGG
CTTAGTAGGCAAATACATTAGCCGAAACTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTCTCTAATGGTCTTT
TAATAGGAATTACTTCAGCCTTAGCTAATAGGCAAAATAGAAAAGGTGATGGCAACCCTTTTTTTGGGGATTACTTGCTT
ATGCAACTCACTAGAAACACAGGCATGGGGATTAACCAAGTTATCAATCAAATGCTAAGACAATACGGAGCGCAAAACCC
CATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTACCCCTAATTTAGACATCTTTATCCCCAAACCAAAAGATGGGG
AGGTTCTAGCGGAGTTTTTTAAAGAGAAAAAACCACTAATCAAAAAATCAAACGAGGAAGTTAATAATGAAGAAGAAATC
TAA

Domains

Predicted by InterProScan.

• Bacterial conjugation TrbI-like protein (TrbI) (175-365)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	53.553	98.5	0.527