Detailed information NTG0073921

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: FOY54_RS01430
• Genome accession: NZ_AP019774
• Coordinates: 274546..275805 (+)
• Length: 419 a.a.
• NCBI ID: WP_034375723.1
• Uniprot ID: A0A6J4CVY0
• Organism: Helicobacter suis strain SNTW101c
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 269546..280805

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FOY54_RS09500 (SNTW_02910)	-	271720..271929 (+)	210	WP_141556969.1	hypothetical protein	-
FOY54_RS01420 (SNTW_02920)	-	271939..273030 (+)	1092	WP_050780156.1	type IV secretion system protein	-
FOY54_RS01425 (SNTW_02930)	-	273027..274556 (+)	1530	WP_006564108.1	TrbG/VirB9 family P-type conjugative transfer protein	-
FOY54_RS01430 (SNTW_02940)	comB10	274546..275805 (+)	1260	WP_034375723.1	DNA type IV secretion system protein ComB10	Machinery gene
FOY54_RS01435 (SNTW_02950)	-	275825..277966 (+)	2142	WP_231102931.1	collagen-like protein	-
FOY54_RS01440 (SNTW_02960)	-	277986..278957 (+)	972	WP_143433398.1	hypothetical protein	-
FOY54_RS01445 (SNTW_02970)	-	278969..279244 (+)	276	WP_064430220.1	hypothetical protein	-
FOY54_RS01455 (SNTW_02980)	-	279409..280489 (+)	1081	Protein_297	RNA-guided endonuclease InsQ/TnpB family protein	-

Sequence

Protein

• Length: 419 a.a.
• Molecular weight: 46535.81 Da
• Isoelectric Point: 10.1397

>NTDB_id=73921 FOY54_RS01430 WP_034375723.1 274546..275805(+) (comB10) [Helicobacter suis strain SNTW101c]
MDANTKKWLKRGGIVLGGALGLFVLAMVVDKNTGKSKEEILELEESTYPLSDYFFVNGKKKDQPQSLPQIETHQHNTKKD
YNTINKELEAQNKALEKALESAKQEAKKLPQVVVLKNTETPKSIGSVATPQPVAPIVPPRTRRLTKEQLELLNSRMSPFE
PLKDAPKAEIDYGVDSFENLKAQDKGTNENKLLRTITADKMIPAFLITPISSQIAGKVTAQVETDIFANMGRAVLIPKGS
KVIGYYNNNNKIGEYRLNIAWTRIITPQGINIMLTNARGVDVKGYNGLIGKVIARNFSKYGMPLLTSTLSNGLLIALTSA
LANRQNKAGVGNPFFGDYLLMQLTRNTGMSLNQIVGQILADKARINPIIIIREGSRVFISPNLDIFIPKPRHGEVLAQFF
KEKKPVVKSQEESYEENEF

Nucleotide

• Length: 1260 bp

>NTDB_id=73921 FOY54_RS01430 WP_034375723.1 274546..275805(+) (comB10) [Helicobacter suis strain SNTW101c]
ATGGATGCTAACACCAAGAAATGGCTCAAAAGAGGAGGGATTGTGCTGGGGGGAGCTTTAGGTTTGTTTGTGCTGGCTAT
GGTGGTGGATAAGAACACAGGAAAGTCTAAAGAAGAAATCCTTGAGTTAGAGGAAAGCACCTATCCTTTGAGTGATTATT
TTTTTGTCAATGGCAAGAAAAAAGACCAGCCCCAGAGTTTGCCACAGATAGAAACACACCAGCACAACACCAAAAAAGAC
TACAACACCATCAACAAGGAGCTAGAAGCGCAAAACAAAGCCCTAGAGAAAGCCTTAGAGAGCGCCAAGCAAGAAGCTAA
GAAACTTCCACAAGTGGTGGTGCTTAAAAACACAGAGACACCCAAGTCTATTGGGAGTGTGGCAACACCCCAGCCTGTTG
CTCCTATTGTGCCCCCACGCACCAGAAGACTCACCAAAGAGCAATTAGAGCTCTTAAACTCTAGAATGAGCCCCTTTGAG
CCCCTCAAAGATGCGCCCAAAGCAGAGATTGACTATGGAGTAGATAGCTTTGAAAATCTCAAAGCCCAAGATAAAGGTAC
AAATGAGAATAAGCTCTTAAGAACGATCACCGCTGATAAGATGATTCCAGCCTTTCTGATCACGCCCATCTCTAGCCAAA
TTGCGGGCAAGGTTACTGCACAGGTGGAGACAGATATTTTTGCCAATATGGGCAGGGCTGTGCTCATCCCTAAGGGCTCA
AAGGTTATTGGCTATTACAATAACAACAATAAGATAGGTGAATACCGCCTCAACATTGCATGGACGCGCATTATCACACC
TCAAGGCATTAATATCATGCTCACCAATGCTAGAGGCGTAGATGTGAAGGGCTATAATGGGTTGATTGGTAAGGTCATTG
CCCGTAACTTCTCTAAATATGGCATGCCCTTACTCACCTCCACTCTCTCTAATGGCTTGCTCATCGCGCTCACCTCTGCT
CTAGCTAATAGACAGAATAAGGCAGGGGTGGGCAACCCTTTTTTTGGGGACTATCTCTTGATGCAACTGACCCGCAACAC
AGGGATGAGCCTCAATCAGATCGTAGGACAAATCCTAGCAGACAAAGCCCGTATCAATCCTATTATCATCATTAGAGAAG
GAAGCCGTGTTTTTATCTCCCCTAATTTAGACATCTTCATCCCTAAGCCTAGGCATGGGGAAGTCCTCGCACAATTTTTT
AAAGAGAAAAAGCCCGTTGTTAAATCACAGGAGGAAAGCTATGAGGAAAATGAGTTTTAG

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (195-385)

3D structure

• AlphaFold DB: A0A6J4CVY0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	53.563	97.136	0.52