Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OH217_RS03010 Genome accession   NZ_CP107281
Coordinates   617139..617678 (+) Length   179 a.a.
NCBI ID   WP_000290801.1    Uniprot ID   A0A234JW84
Organism   Escherichia coli strain JCL301     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 612139..622678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH217_RS02970 (OH217_02955) - 612280..612585 (+) 306 WP_010892536.1 hypothetical protein -
  OH217_RS02975 (OH217_02960) - 612662..613345 (+) 684 WP_000085939.1 DNA methylase -
  OH217_RS02980 (OH217_02965) - 613346..613567 (+) 222 WP_001104904.1 hypothetical protein -
  OH217_RS02985 (OH217_02970) - 613461..614015 (+) 555 WP_001358893.1 DUF1380 family protein -
  OH217_RS02990 (OH217_02975) - 614061..614837 (+) 777 WP_001005032.1 hypothetical protein -
  OH217_RS02995 (OH217_02980) - 615251..615676 (+) 426 WP_001198920.1 antirestriction protein -
  OH217_RS03000 (OH217_02985) - 615723..616145 (+) 423 WP_000271685.1 DUF1380 family protein -
  OH217_RS03005 (OH217_02990) - 616142..616333 (+) 192 WP_317566432.1 hypothetical protein -
  OH217_RS23375 - 616303..616821 (-) 519 WP_407065365.1 hypothetical protein -
  OH217_RS23380 - 616908..617113 (+) 206 Protein_594 single-stranded DNA-binding protein -
  OH217_RS03010 (OH217_02995) ssb 617139..617678 (+) 540 WP_000290801.1 single-stranded DNA-binding protein Machinery gene
  OH217_RS03015 (OH217_03000) - 617735..617968 (+) 234 WP_000005990.1 DUF905 family protein -
  OH217_RS03020 (OH217_03005) - 618034..619992 (+) 1959 WP_317566435.1 ParB/RepB/Spo0J family partition protein -
  OH217_RS03025 (OH217_03010) psiB 620047..620481 (+) 435 Protein_598 conjugation system SOS inhibitor PsiB -
  OH217_RS03030 (OH217_03015) - 620478..621240 (+) 763 Protein_599 plasmid SOS inhibition protein A -
  OH217_RS03035 (OH217_03020) - 621414..621563 (+) 150 Protein_600 DUF5431 family protein -
  OH217_RS03040 (OH217_03025) - 621505..621630 (+) 126 WP_096937776.1 type I toxin-antitoxin system Hok family toxin -
  OH217_RS03045 (OH217_03030) - 621907..622227 (-) 321 Protein_602 hypothetical protein -
  OH217_RS03050 (OH217_03035) - 622297..622503 (+) 207 WP_000547965.1 hypothetical protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19636.09 Da        Isoelectric Point: 7.9843

>NTDB_id=739230 OH217_RS03010 WP_000290801.1 617139..617678(+) (ssb) [Escherichia coli strain JCL301]
MAVRGINKVILVGRLGKDPEVRYIPNGGAVANLQVATSESWRDKQTGEMREQTEWHRVVLFGKLAEVAGECLRKGAQVYI
EGQLRTRSWEDNGITRYVTEILVKTTGTMQMLVRAAGAQTQPEEGQQFSGQPQPEPQAEAGTKKGGAKTKGRGRKAAQPE
PQPQPPEGDDYGFSDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=739230 OH217_RS03010 WP_000290801.1 617139..617678(+) (ssb) [Escherichia coli strain JCL301]
ATGGCAGTTCGTGGCATTAACAAGGTCATCCTCGTAGGACGCCTGGGAAAGGATCCGGAAGTCCGTTACATCCCCAACGG
GGGCGCAGTGGCAAACCTGCAGGTGGCCACGTCAGAAAGCTGGCGTGACAAACAGACGGGGGAGATGCGGGAGCAGACAG
AATGGCATCGCGTGGTGCTGTTCGGCAAGCTCGCGGAAGTGGCAGGTGAATGTCTGCGCAAGGGCGCGCAGGTCTACATC
GAAGGTCAGCTTCGCACCCGTAGCTGGGAGGATAACGGTATCACCCGTTACGTCACCGAAATTCTTGTTAAGACCACGGG
CACCATGCAGATGCTGGTACGTGCCGCAGGTGCTCAGACTCAGCCGGAAGAGGGGCAACAGTTCAGCGGTCAGCCTCAGC
CGGAACCACAGGCGGAGGCCGGTACGAAAAAAGGTGGCGCAAAAACGAAAGGCCGTGGACGTAAGGCCGCGCAGCCGGAG
CCTCAGCCGCAACCGCCGGAGGGTGACGATTACGGGTTTTCAGACGATATCCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.348

100

0.559
  ssb Glaesserella parasuis strain SC1401

47.283

100

0.486
  ssb Neisseria gonorrhoeae MS11

41.398

100

0.43
  ssb Neisseria meningitidis MC58

41.304

100

0.425