Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NDN57_RS11020 Genome accession   NZ_CP107264
Coordinates   2100008..2100514 (-) Length   168 a.a.
NCBI ID   WP_260240116.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10231     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2095008..2105514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN57_RS11000 (NDN57_011000) - 2095065..2095547 (+) 483 WP_003694396.1 CinA family protein -
  NDN57_RS11005 (NDN57_011005) msrAB 2095631..2097199 (-) 1569 WP_003694393.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  NDN57_RS11010 (NDN57_011010) pilA 2097345..2098598 (+) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  NDN57_RS11015 (NDN57_011015) - 2098863..2099547 (-) 685 Protein_2120 opacity family porin -
  NDN57_RS11020 (NDN57_011020) pilE 2100008..2100514 (-) 507 WP_260240116.1 pilin Machinery gene
  NDN57_RS11025 (NDN57_011025) - 2100883..2101332 (-) 450 Protein_2122 pilin -
  NDN57_RS11030 (NDN57_011030) lpxC 2101666..2102589 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  NDN57_RS11040 (NDN57_011040) - 2103091..2103441 (-) 351 Protein_2124 pilin -
  NDN57_RS11045 (NDN57_011045) - 2103481..2103837 (-) 357 Protein_2125 pilin -
  NDN57_RS11050 (NDN57_011050) - 2103878..2104093 (-) 216 Protein_2126 pilin -
  NDN57_RS11055 (NDN57_011055) - 2104466..2104597 (-) 132 WP_010356054.1 hypothetical protein -
  NDN57_RS11060 (NDN57_011060) - 2104679..2105367 (-) 689 Protein_2128 SprT family zinc-dependent metalloprotease -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18024.46 Da        Isoelectric Point: 7.8082

>NTDB_id=738898 NDN57_RS11020 WP_260240116.1 2100008..2100514(-) (pilE) [Neisseria gonorrhoeae strain 10231]
MNTLQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNNGEWPKDNGSAGVASASEIK
GKYVKEVEVKNGVVTATMASSNVNKEIKDKRLSLWAKRQDGSVKWFCGQPVKRAAAGTDDDAVTADDKNKIETKHLPSTC
RDTSSAGT

Nucleotide


Download         Length: 507 bp        

>NTDB_id=738898 NDN57_RS11020 WP_260240116.1 2100008..2100514(-) (pilE) [Neisseria gonorrhoeae strain 10231]
ATGAATACCCTTCAAAAAGGCTTTACCCTTATCGAGCTGATGATTGTGATCGCCATCGTCGGCATTTTGGCGGCAGTCGC
CCTTCCCGCCTACCAAGACTACACCGCCCGCGCGCAAGTTTCCGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCG
TTACCGAGTATTACCTGAATAACGGCGAATGGCCCAAAGACAACGGCTCTGCCGGCGTGGCATCCGCTTCAGAAATCAAA
GGCAAATATGTTAAGGAAGTTGAAGTCAAAAACGGCGTCGTTACCGCCACAATGGCTTCAAGCAACGTAAACAAAGAAAT
CAAAGACAAAAGACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCG
CCGCCGCCGGCACCGACGACGACGCCGTCACCGCCGACGACAAAAACAAAATCGAAACCAAGCACCTGCCGTCAACCTGC
CGCGATACGTCATCTGCCGGTACGTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-161)

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

84.337

98.81

0.833
  pilE Neisseria gonorrhoeae MS11

80.24

99.405

0.798
  comP Acinetobacter baylyi ADP1

38.372

100

0.393
  pilA/pilA1 Eikenella corrodens VA1

37.209

100

0.381