Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   QBL25_RS09385 Genome accession   NZ_CP122310
Coordinates   2174482..2175564 (-) Length   360 a.a.
NCBI ID   WP_409056561.1    Uniprot ID   -
Organism   Streptomyces sp. SYP-A7185     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2169482..2180564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBL25_RS09365 - 2170213..2170761 (-) 549 WP_409056557.1 adenine phosphoribosyltransferase -
  QBL25_RS09370 secF 2170758..2171891 (-) 1134 WP_409056558.1 protein translocase subunit SecF -
  QBL25_RS09375 secD 2171893..2173677 (-) 1785 WP_409056559.1 protein translocase subunit SecD -
  QBL25_RS09380 yajC 2173847..2174317 (-) 471 WP_409056560.1 preprotein translocase subunit YajC -
  QBL25_RS09385 ruvB 2174482..2175564 (-) 1083 WP_409056561.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QBL25_RS09390 ruvA 2175651..2176259 (-) 609 WP_409056562.1 Holliday junction branch migration protein RuvA -
  QBL25_RS09395 ruvC 2176256..2176921 (-) 666 WP_409056563.1 crossover junction endodeoxyribonuclease RuvC -
  QBL25_RS09400 - 2177035..2177787 (-) 753 WP_363210989.1 YebC/PmpR family DNA-binding transcriptional regulator -
  QBL25_RS09405 pdxT 2177863..2178471 (-) 609 WP_409056564.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  QBL25_RS09410 pdxS 2178484..2179398 (-) 915 WP_351164842.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  QBL25_RS09415 - 2179535..2180080 (-) 546 WP_409056565.1 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 38195.63 Da        Isoelectric Point: 4.8947

>NTDB_id=738852 QBL25_RS09385 WP_409056561.1 2174482..2175564(-) (ruvB) [Streptomyces sp. SYP-A7185]
MNWDETTDDTTAPAGAAERLVGASADGEDQAVEAALRPKDLGEFIGQEKVREQLDLVLRAARARGATADHVLLSGAPGLG
KTTLSMIIAAEMGAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGATA
IPLELPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFYEPAELERVIHRSAHLLDVAIDPAGAAEIAGRSRGTPRIANRLL
RRVRDYAQVKADGAINKDIAGAALKVYEVDDRGLDRLDRAVLEALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFLVR
EGLLARTPRGRVGTPAAWAHLGLVPPRQAGGIGQGDLFGA

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=738852 QBL25_RS09385 WP_409056561.1 2174482..2175564(-) (ruvB) [Streptomyces sp. SYP-A7185]
ATGAACTGGGACGAGACGACCGACGACACGACCGCCCCGGCGGGCGCGGCCGAGCGGCTCGTCGGTGCGTCCGCCGACGG
CGAGGACCAAGCGGTCGAGGCCGCCCTGCGCCCCAAGGACCTGGGCGAGTTCATCGGCCAGGAGAAGGTCCGCGAGCAGC
TCGATCTCGTCCTGCGGGCGGCCCGCGCGCGGGGCGCCACCGCCGACCACGTGCTGCTCTCCGGCGCCCCCGGCCTCGGC
AAGACCACCCTCTCGATGATCATCGCGGCCGAGATGGGCGCCCCGATCCGCATCACCAGCGGTCCCGCCATCCAGCACGC
GGGCGACCTCGCCGCGATCCTCTCCTCCCTCCAGGAGGGCGAGGTCCTCTTCCTCGACGAGATCCACCGGATGTCGCGGC
CCGCCGAGGAGATGCTCTACATGGCGATGGAGGACTTCCGCGTCGACGTGATCGTCGGCAAGGGCCCCGGCGCCACGGCC
ATCCCCCTGGAGCTGCCGCCCTTCACCCTGGTCGGCGCCACCACCCGGGCCGGTCTGCTGCCGCCGCCGCTGCGCGACCG
CTTCGGCTTCACCGCGCACATGGAGTTCTACGAACCCGCCGAGCTGGAGCGCGTGATCCACCGCTCCGCACACCTGCTCG
ACGTGGCGATCGACCCGGCCGGCGCCGCCGAGATCGCCGGGCGCTCGCGCGGCACGCCCCGTATCGCCAACCGCCTGCTG
CGCCGCGTCCGGGACTACGCGCAGGTCAAGGCCGACGGAGCGATCAACAAGGACATCGCGGGCGCCGCCCTCAAGGTCTA
CGAGGTGGACGACCGCGGGCTCGACCGCCTGGACCGCGCCGTCCTGGAGGCCCTGCTCAAGCTCTTCGGCGGCGGCCCGG
TCGGCCTGTCGACCCTCGCGGTGGCCGTGGGGGAGGAGCGCGAGACGGTCGAGGAGGTCGCCGAGCCGTTCCTGGTGCGG
GAGGGACTGCTCGCGCGCACGCCCCGCGGCCGGGTCGGGACCCCCGCCGCATGGGCGCATCTCGGCCTTGTTCCGCCACG
GCAGGCGGGCGGAATCGGACAAGGGGACCTGTTCGGGGCGTGA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(197-270)

RuvB C-terminal winged helix domain (WHD_RuvB)

(272-341)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(36-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

54.545

91.667

0.5
  ruvB Synechocystis sp. PCC 6803

52.941

89.722

0.475
  ruvB Streptococcus pneumoniae R6

51.543

90

0.464
  ruvB Streptococcus pneumoniae D39

51.543

90

0.464
  ruvB Streptococcus pneumoniae TIGR4

51.543

90

0.464
  ruvB Helicobacter pylori 26695

50.314

88.333

0.444