Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   N5938_RS10065 Genome accession   NZ_CP107257
Coordinates   2161830..2163167 (-) Length   445 a.a.
NCBI ID   WP_058150847.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 2019CK-00034     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2156830..2168167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5938_RS10035 (N5938_10035) pilX 2157479..2158066 (-) 588 WP_034037187.1 type 4a pilus minor pilin PilX -
  N5938_RS10040 (N5938_10040) pilW 2158063..2158887 (-) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  N5938_RS10045 (N5938_10045) pilV 2158884..2159441 (-) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  N5938_RS10050 (N5938_10050) - 2159432..2159938 (-) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  N5938_RS10055 (N5938_10055) - 2160044..2160554 (-) 511 Protein_1977 GspH/FimT family pseudopilin -
  N5938_RS10060 (N5938_10060) thiO 2160690..2161784 (+) 1095 WP_003134931.1 glycine oxidase ThiO -
  N5938_RS10065 (N5938_10065) pilR 2161830..2163167 (-) 1338 WP_058150847.1 two-component system response regulator PilR Regulator
  N5938_RS10070 (N5938_10070) pilS 2163182..2164774 (-) 1593 WP_009316268.1 two-component system sensor histidine kinase PilS Regulator
  N5938_RS10075 (N5938_10075) - 2164764..2165009 (-) 246 WP_058150845.1 PP0621 family protein -
  N5938_RS10080 (N5938_10080) - 2165166..2166191 (-) 1026 WP_003102590.1 outer membrane protein assembly factor BamD -
  N5938_RS10085 (N5938_10085) rluD 2166337..2167299 (+) 963 WP_003094686.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  N5938_RS10090 (N5938_10090) pgeF 2167296..2168024 (+) 729 WP_023092931.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49711.02 Da        Isoelectric Point: 5.8654

>NTDB_id=738811 N5938_RS10065 WP_058150847.1 2161830..2163167(-) (pilR) [Pseudomonas aeruginosa strain 2019CK-00034]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAREPFDLCLTDMRLPDGSGLDLVQYIQQRHPQTPVAM
ITAYGSLDTAIQALKAGAFDFLTKPVDLGRLRELVATALRLRNPEAEEAPVDNRLLGESPPMRALRNQIGKLARSQAPVY
ISGESGSGKELVARLIHEQGPRIERPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAASGGTLFLDEVADLP
MAMQVKLLRAIQEKAVRAVGGQQEVAVDVRILCATHKDLAAEVGAGRFRQDLYYRLNVIELRVPPLRERREDIPLLAERI
LKRLAGDTGLPAARLTGDAQEKLKNYRFPGNVRELENMLERAYTLCEDDQIQAHDLRLADAPGASQEGAASLSEIDNLED
YLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=738811 N5938_RS10065 WP_058150847.1 2161830..2163167(-) (pilR) [Pseudomonas aeruginosa strain 2019CK-00034]
ATGAGCCGACAAAAAGCCCTGATCGTCGACGATGAACCGGATATCCGCGAACTGCTGGAAATCACTCTCGGCCGCATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAAGCCCGCGAGTTGCTGGCCCGCGAGCCGTTCGACCTGTGCCTCACCG
ACATGCGCCTGCCGGACGGCAGCGGCCTCGATCTGGTCCAGTACATCCAGCAGCGCCATCCACAGACCCCGGTGGCCATG
ATCACCGCGTACGGCAGCCTGGACACCGCGATCCAGGCGCTCAAGGCCGGTGCCTTCGACTTCCTCACCAAACCGGTCGA
CCTCGGTCGCTTGCGGGAGCTAGTGGCAACCGCCCTGCGCTTGCGCAACCCGGAAGCCGAGGAAGCGCCGGTGGACAACC
GCCTGCTCGGCGAGTCGCCGCCGATGCGCGCCCTGCGCAACCAGATCGGCAAGCTGGCGCGCAGCCAGGCGCCGGTCTAC
ATCAGTGGCGAGTCCGGCAGCGGCAAGGAACTGGTGGCGCGCCTGATCCACGAGCAGGGGCCACGTATCGAGCGGCCGTT
CGTGCCGGTGAACTGCGGCGCGATTCCCTCCGAGCTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACTG
GCGCTATCGAAGACAAGCAGGGCCTGTTCCAGGCCGCCAGCGGTGGCACCCTGTTCCTCGACGAAGTCGCCGACCTGCCG
ATGGCCATGCAGGTCAAACTGCTCCGGGCGATCCAGGAAAAGGCCGTGCGCGCGGTCGGCGGCCAGCAGGAGGTCGCCGT
CGACGTGCGCATCCTCTGCGCCACCCACAAGGACCTCGCCGCCGAAGTCGGCGCCGGGCGCTTCCGCCAGGACCTCTACT
ACCGCCTCAACGTCATCGAGCTGCGCGTACCGCCGCTGCGCGAACGCCGCGAGGACATCCCGCTGCTCGCCGAACGCATC
CTCAAGCGCCTGGCCGGCGACACCGGCCTGCCGGCCGCCAGGCTGACCGGCGACGCACAGGAGAAGCTGAAGAACTACCG
ATTCCCAGGCAACGTCCGCGAGCTGGAGAATATGCTGGAGCGCGCCTACACCCTGTGCGAAGACGACCAGATCCAGGCTC
ACGACCTGCGCCTGGCCGATGCGCCGGGTGCCAGCCAGGAAGGCGCGGCGAGCCTGAGCGAAATCGACAACCTCGAGGAC
TACCTGGAAGACATCGAGCGCAAGCTGATCATGCAGGCGCTCGAGGAGACCCGCTGGAACCGCACCGCCGCGGCCCAGCG
CCTGGGCCTGACGTTCCGCTCGATGCGCTACCGCCTGAAAAAGCTGGGCATCGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(135-301)

Response regulator receiver domain (Response_reg)

(7-115)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

99.775

100

0.998
  pilR Acinetobacter baumannii strain A118

50.98

100

0.526