Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   QBL01_RS04840 Genome accession   NZ_CP121769
Coordinates   978751..980589 (-) Length   612 a.a.
NCBI ID   WP_021117246.1    Uniprot ID   -
Organism   Glaesserella parasuis strain Z44     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 973751..985589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBL01_RS04815 (QBL01_04815) - 974178..975017 (-) 840 WP_021111264.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  QBL01_RS04820 (QBL01_04820) ampD 975075..975641 (+) 567 WP_279378669.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  QBL01_RS04825 (QBL01_04825) - 975634..976542 (-) 909 WP_021111266.1 lysine exporter LysO family protein -
  QBL01_RS04830 (QBL01_04830) dinB 976686..977756 (+) 1071 WP_279378670.1 DNA polymerase IV -
  QBL01_RS04835 (QBL01_04835) htpX 977862..978713 (+) 852 WP_021117247.1 protease HtpX -
  QBL01_RS04840 (QBL01_04840) uvrC 978751..980589 (-) 1839 WP_021117246.1 excinuclease ABC subunit UvrC Machinery gene
  QBL01_RS04845 (QBL01_04845) pgsA 980685..981233 (-) 549 WP_021112533.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QBL01_RS04850 (QBL01_04850) modB 981388..982089 (+) 702 WP_035519983.1 molybdate ABC transporter permease subunit -
  QBL01_RS04855 (QBL01_04855) modC 982089..983150 (+) 1062 WP_279378671.1 molybdenum ABC transporter ATP-binding protein ModC -
  QBL01_RS04860 (QBL01_04860) sodA 983369..983989 (+) 621 WP_021112527.1 superoxide dismutase [Mn] -
  QBL01_RS04865 (QBL01_04865) - 984038..984332 (-) 295 Protein_935 hypothetical protein -
  QBL01_RS04870 (QBL01_04870) - 984372..985023 (+) 652 Protein_936 IS1595 family transposase -

Sequence

Protein


Download         Length: 612 a.a.        Molecular weight: 69563.66 Da        Isoelectric Point: 8.7704

>NTDB_id=738812 QBL01_RS04840 WP_021117246.1 978751..980589(-) (uvrC) [Glaesserella parasuis strain Z44]
MSKFNSKQFLADTPHNPGVYRMYDDKGTIIYVGKAKDLKKRLSSYFRSTLASRKTEALVSQIAHIDTTITHSETEALLLE
HNYIKENQPKYNVLLRDDKSYPYILLTKHQHPRLASFRGSKKIAGEYFGPYPNAGAVRETLNLLQKLFPIRQCEDNYYKN
RSRPCLQYQIGRCLAPCVEGVYSQREYDQQVEYVRLFLQGKDQQVIEHLISKMEKAAEDLDFEAAARFRDQIQQVRAVTE
KQFVSNERLDDLDIISIAYQHGIACVHILFVRQGKVLGSRSYFPKVPNHTELAELSDTFIGQFYLQMNQHRTIPHQIIID
HPVSEVEALEKVLSEQTGHKVSITDKVRGEKSRYLALAKTNAMAALTLQLKQDDRIQTRYEALQAVLSLPKIARMECFDI
SHTMGEQTVASCVVFDENGPLKSDYRRFNIEGITGGDDYAAMEQALIKRYDKPLPPEKIPDIIFIDGGKGQLNRALETFA
NLKVEWDKSKPLLIGVAKGVERKAGLETLLISKWDKEIHLPPDSPALHLIQHIRDESHNHAISGHRKKRQKAFTESGLEA
IAGVGAKRRHLLLKYLGGMQGVKSATLDEIKSVPGISVSLAEIIFDTLNYSE

Nucleotide


Download         Length: 1839 bp        

>NTDB_id=738812 QBL01_RS04840 WP_021117246.1 978751..980589(-) (uvrC) [Glaesserella parasuis strain Z44]
ATGTCAAAATTCAATTCCAAACAATTTCTTGCCGATACGCCACATAACCCTGGTGTTTATCGTATGTATGATGATAAAGG
CACAATCATCTATGTCGGTAAGGCAAAAGATTTAAAAAAGCGTCTATCGAGCTATTTTCGTAGCACTCTTGCCAGCCGAA
AAACTGAAGCCTTGGTATCGCAAATTGCTCATATTGATACCACCATTACCCATTCGGAAACCGAAGCCTTACTGTTGGAA
CACAATTACATTAAGGAAAATCAACCGAAATACAATGTGCTGCTTCGTGATGATAAATCTTACCCTTATATTTTGCTCAC
CAAACACCAGCACCCACGTTTAGCCAGCTTTCGGGGAAGCAAAAAAATTGCAGGGGAATATTTTGGGCCTTACCCAAATG
CAGGGGCGGTGCGGGAAACCTTAAATCTGCTACAAAAACTGTTTCCGATCCGCCAGTGTGAAGACAACTACTACAAAAAC
CGTTCTCGCCCTTGTTTACAATATCAAATCGGGCGTTGCCTTGCCCCTTGCGTTGAAGGCGTTTATTCCCAACGAGAATA
CGATCAACAGGTGGAGTATGTTCGCTTATTCTTACAAGGTAAAGATCAGCAAGTAATCGAACATTTGATTAGCAAAATGG
AAAAAGCCGCGGAAGATCTGGATTTTGAAGCAGCTGCTCGTTTTCGAGATCAAATTCAGCAGGTGCGAGCGGTCACTGAA
AAGCAATTTGTATCGAATGAACGTCTAGATGATCTCGATATTATCTCGATTGCCTATCAACACGGTATCGCTTGCGTGCA
TATTCTGTTTGTACGACAAGGGAAAGTGTTGGGTAGCCGAAGCTATTTCCCCAAAGTGCCGAACCATACCGAACTTGCCG
AATTGAGCGACACTTTTATCGGGCAGTTTTATTTGCAGATGAACCAACATCGCACCATTCCGCACCAAATCATTATCGAT
CACCCCGTGAGCGAAGTGGAAGCCTTAGAAAAGGTATTGTCGGAACAAACAGGACATAAAGTGAGTATTACCGATAAGGT
GCGTGGCGAGAAAAGCCGTTATCTTGCGCTTGCCAAAACGAATGCAATGGCAGCATTGACCTTACAACTCAAGCAAGACG
ATCGTATCCAAACCCGTTATGAAGCCTTGCAAGCGGTGCTTTCTTTGCCAAAAATTGCAAGAATGGAATGCTTTGACATC
AGTCACACGATGGGCGAACAAACAGTCGCTTCTTGTGTTGTATTTGATGAAAACGGCCCGTTAAAATCTGACTATCGCCG
TTTTAACATTGAAGGTATTACAGGGGGCGATGATTATGCTGCGATGGAACAAGCTCTGATCAAGCGTTACGATAAACCGC
TTCCGCCTGAAAAAATCCCTGATATTATCTTCATTGACGGCGGAAAAGGGCAGTTAAACCGAGCCTTAGAAACCTTTGCC
AATCTCAAAGTGGAATGGGATAAATCCAAACCATTACTTATCGGCGTAGCAAAAGGCGTAGAACGCAAGGCAGGGTTAGA
AACCTTGCTGATCAGCAAATGGGACAAGGAAATCCACTTACCGCCCGACAGCCCAGCGTTACATTTAATTCAGCATATCC
GTGATGAATCCCATAACCACGCCATTAGCGGACACCGTAAAAAACGGCAAAAAGCCTTTACCGAAAGCGGTTTAGAGGCA
ATCGCTGGCGTTGGAGCCAAACGCCGCCATTTGTTGCTAAAATATCTCGGTGGTATGCAAGGCGTCAAATCAGCAACACT
TGATGAAATTAAATCGGTTCCTGGAATTTCAGTATCTTTGGCTGAGATTATTTTCGATACCCTAAATTATAGTGAATAA

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(385-542)

UvrB/uvrC motif (UVR)

(204-236)

GIY-YIG catalytic domain (GIY-YIG)

(17-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

37.459

99.02

0.371
  uvrC Streptococcus pneumoniae R6

37.129

99.02

0.368
  uvrC Streptococcus pneumoniae D39

37.129

99.02

0.368