Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   QBL01_RS04565 Genome accession   NZ_CP121769
Coordinates   916544..917548 (+) Length   334 a.a.
NCBI ID   WP_021113735.1    Uniprot ID   -
Organism   Glaesserella parasuis strain Z44     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 911544..922548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBL01_RS04555 (QBL01_04555) - 912047..914518 (+) 2472 WP_021118377.1 class I adenylate cyclase -
  QBL01_RS04560 (QBL01_04560) - 914533..916467 (+) 1935 WP_021117306.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  QBL01_RS04565 (QBL01_04565) ruvB 916544..917548 (+) 1005 WP_021113735.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QBL01_RS04570 (QBL01_04570) - 917731..919368 (+) 1638 WP_075606208.1 ABC transporter substrate-binding protein -
  QBL01_RS04575 (QBL01_04575) oppB 919463..920386 (+) 924 WP_005711628.1 oligopeptide ABC transporter permease OppB -
  QBL01_RS04580 (QBL01_04580) oppC 920397..921317 (+) 921 WP_279378662.1 oligopeptide ABC transporter permease OppC -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36924.27 Da        Isoelectric Point: 4.8644

>NTDB_id=738810 QBL01_RS04565 WP_021113735.1 916544..917548(+) (ruvB) [Glaesserella parasuis strain Z44]
MIEADRIISASAKKEDETIDRAIRPKMLADYVGQPSVREQMEIFIKAAKLRNDALDHLLIFGPPGLGKTTLANIIANEMG
VNIRTTSGPVLEKAGDLAAILTNLEPYDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVSRSANCLNLNLSPEGAYEIARRSRGTPRIANRLLRRVRDFADVRNNG
IISSDIAKQALTMLDVDSEGFDFMDRKLLSAVIERFDGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRIA
TSRTYSHLGLVKSE

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=738810 QBL01_RS04565 WP_021113735.1 916544..917548(+) (ruvB) [Glaesserella parasuis strain Z44]
ATGATTGAAGCTGACAGAATTATCAGTGCCTCAGCAAAGAAAGAGGACGAAACTATCGATCGTGCAATTCGCCCTAAAAT
GCTTGCCGATTATGTCGGACAGCCGTCAGTGCGAGAGCAGATGGAAATTTTTATCAAGGCGGCTAAATTACGCAATGATG
CTTTAGATCACCTGTTGATCTTTGGGCCACCAGGCTTAGGTAAAACGACACTGGCGAACATTATTGCAAACGAAATGGGC
GTGAATATCCGCACGACATCAGGGCCAGTGCTGGAAAAAGCAGGGGATCTTGCCGCAATTCTGACAAACCTCGAACCCTA
CGATGTGCTTTTTATTGACGAAATTCACCGCTTGTCGCCAGCCATTGAGGAAGTGTTGTACCCTGCAATGGAAGATTATC
AGTTGGATATTATGATTGGCGAAGGCCCAGCGGCACGTTCAATTAAACTCGATCTTCCCCCATTTACCCTCGTTGGGGCA
ACAACACGAGCAGGTTCTTTAACGTCGCCTTTGCGTGACCGCTTCGGCATTGTTCAACGCCTTGAATTTTATTCCGTTGA
AGATCTTACCTCCATTGTTAGCCGTAGTGCAAACTGTTTAAATTTAAATTTATCCCCTGAAGGAGCCTATGAAATCGCAC
GCCGTTCACGCGGAACGCCTCGAATTGCCAACCGCTTGTTACGCCGAGTACGAGATTTTGCAGACGTACGAAACAACGGC
ATTATTTCCTCTGACATTGCAAAACAAGCATTAACGATGTTAGATGTCGATTCCGAAGGCTTTGATTTTATGGATAGAAA
ATTACTTTCTGCTGTAATTGAGCGATTTGATGGCGGACCCGTTGGATTAGATAACCTTGCAGCCGCCATTGGCGAGGAAC
GGGAAACCATTGAAGATGTGCTAGAGCCTTATTTAATCCAACAAGGCTTTTTGCAACGTACACCAAGAGGGCGGATAGCA
ACGTCGAGAACTTATAGCCATTTGGGGTTGGTAAAATCTGAATAG

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)

RuvB AAA lid domain (AAA_lid_4)

(184-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

61.963

97.605

0.605
  ruvB Streptococcus pneumoniae TIGR4

59.574

98.503

0.587
  ruvB Streptococcus pneumoniae R6

59.574

98.503

0.587
  ruvB Streptococcus pneumoniae D39

59.574

98.503

0.587
  ruvB Synechocystis sp. PCC 6803

54.829

96.108

0.527
  ruvB Helicobacter pylori 26695

53.681

97.605

0.524