Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   N5938_RS10045 Genome accession   NZ_CP107257
Coordinates   2158884..2159441 (-) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 2019CK-00034     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2153884..2164441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5938_RS10030 (N5938_10030) pilY1 2153976..2157467 (-) 3492 Protein_1972 type 4a pilus biogenesis protein PilY1 -
  N5938_RS10035 (N5938_10035) pilX 2157479..2158066 (-) 588 WP_034037187.1 type 4a pilus minor pilin PilX -
  N5938_RS10040 (N5938_10040) pilW 2158063..2158887 (-) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  N5938_RS10045 (N5938_10045) pilV 2158884..2159441 (-) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  N5938_RS10050 (N5938_10050) - 2159432..2159938 (-) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  N5938_RS10055 (N5938_10055) - 2160044..2160554 (-) 511 Protein_1977 GspH/FimT family pseudopilin -
  N5938_RS10060 (N5938_10060) thiO 2160690..2161784 (+) 1095 WP_003134931.1 glycine oxidase ThiO -
  N5938_RS10065 (N5938_10065) pilR 2161830..2163167 (-) 1338 WP_058150847.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=738810 N5938_RS10045 WP_003119423.1 2158884..2159441(-) (pilV) [Pseudomonas aeruginosa strain 2019CK-00034]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=738810 N5938_RS10045 WP_003119423.1 2158884..2159441(-) (pilV) [Pseudomonas aeruginosa strain 2019CK-00034]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995