Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   QBK97_RS07290 Genome accession   NZ_CP121768
Coordinates   1503978..1504985 (-) Length   335 a.a.
NCBI ID   WP_021119041.1    Uniprot ID   -
Organism   Glaesserella parasuis strain d76     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1498978..1509985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBK97_RS07275 (QBK97_07275) oppC 1500211..1501131 (-) 921 WP_005711630.1 oligopeptide ABC transporter permease OppC -
  QBK97_RS07280 (QBK97_07280) oppB 1501142..1502065 (-) 924 WP_043896076.1 oligopeptide ABC transporter permease OppB -
  QBK97_RS07285 (QBK97_07285) - 1502160..1503797 (-) 1638 WP_021115725.1 ABC transporter substrate-binding protein -
  QBK97_RS07290 (QBK97_07290) ruvB 1503978..1504985 (-) 1008 WP_021119041.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QBK97_RS07295 (QBK97_07295) - 1505062..1506996 (-) 1935 WP_075592898.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  QBK97_RS07300 (QBK97_07300) - 1507011..1509482 (-) 2472 WP_160413755.1 class I adenylate cyclase -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36955.33 Da        Isoelectric Point: 4.9397

>NTDB_id=738758 QBK97_RS07290 WP_021119041.1 1503978..1504985(-) (ruvB) [Glaesserella parasuis strain d76]
MIEADRIISASAKKEDETIDRAIRPKMLADYVGQPSVREQMEIFIKAAKLRNDALDHLLIFGPPGLGKTTLANIIANEMG
VNIRTTSGPVLEKAGDLAAILTNLEPYDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVSRSAGCLNLNLATTDAAYEIARRSRGTPRIANRLLRRVRDFADVRNN
GIISSNIAKQALTMLDVDSEGFDFMDRKLLSAVIERFDGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRI
ATSRTYSHLGLVKSE

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=738758 QBK97_RS07290 WP_021119041.1 1503978..1504985(-) (ruvB) [Glaesserella parasuis strain d76]
ATGATTGAAGCTGACAGAATTATCAGTGCCTCAGCAAAGAAAGAGGACGAAACTATCGATCGTGCAATTCGCCCTAAAAT
GCTTGCCGATTATGTCGGACAGCCGTCAGTGCGAGAGCAGATGGAAATTTTTATCAAGGCGGCTAAATTACGCAATGATG
CTTTAGATCACCTGTTGATCTTTGGGCCACCAGGCTTAGGTAAAACGACACTGGCGAACATTATTGCAAACGAAATGGGC
GTGAATATCCGCACGACATCAGGGCCAGTGCTGGAAAAAGCAGGGGATCTTGCCGCAATTCTGACAAACCTCGAACCCTA
CGATGTGCTTTTTATTGACGAAATTCACCGCTTGTCGCCAGCCATTGAGGAAGTGTTGTACCCTGCAATGGAAGATTATC
AGTTGGATATTATGATTGGTGAAGGCCCAGCGGCACGTTCAATTAAACTCGATCTTCCCCCATTTACCCTCGTTGGGGCA
ACAACACGAGCAGGTTCTTTAACGTCGCCTTTGCGTGACCGCTTTGGCATTGTGCAACGCCTGGAGTTTTATTCCGTTGA
AGATCTCACTTCGATTGTAAGCCGTAGTGCTGGCTGTTTAAATTTAAATCTTGCCACCACCGATGCCGCTTATGAAATTG
CACGCCGTTCACGCGGAACTCCTCGTATTGCAAACCGCTTGTTACGCAGAGTACGAGATTTTGCAGACGTACGAAACAAC
GGCATTATTTCCTCTAACATTGCAAAACAAGCATTAACGATGTTAGATGTCGATTCCGAAGGCTTTGATTTTATGGATAG
AAAATTACTTTCTGCTGTAATTGAGCGATTTGATGGCGGACCCGTTGGATTAGATAACCTTGCAGCCGCCATTGGCGAGG
AACGGGAAACCATTGAAGATGTGCTAGAGCCTTATTTAATCCAACAAGGCTTTTTGCAACGCACCCCAAGAGGGCGAATA
GCCACATCGAGGACTTATAGTCATTTGGGGTTGGTAAAATCTGAATAG

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)

RuvB AAA lid domain (AAA_lid_4)

(184-258)

RuvB C-terminal winged helix domain (WHD_RuvB)

(260-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

61.468

97.612

0.6
  ruvB Streptococcus pneumoniae TIGR4

59.697

98.507

0.588
  ruvB Streptococcus pneumoniae R6

59.697

98.507

0.588
  ruvB Streptococcus pneumoniae D39

59.697

98.507

0.588
  ruvB Helicobacter pylori 26695

53.517

97.612

0.522
  ruvB Synechocystis sp. PCC 6803

54.348

96.119

0.522