Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N3Z32_RS28100 Genome accession   NZ_CP107244
Coordinates   6244061..6244582 (+) Length   173 a.a.
NCBI ID   WP_046802916.1    Uniprot ID   A0A6S7A5I3
Organism   Achromobacter sp. SS2-2022     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6239061..6249582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N3Z32_RS28090 (N3Z32_28110) uvrA 6239446..6242307 (-) 2862 WP_268082320.1 excinuclease ABC subunit UvrA -
  N3Z32_RS28095 (N3Z32_28115) - 6242497..6243681 (+) 1185 WP_268080516.1 MFS transporter -
  N3Z32_RS28100 (N3Z32_28120) ssb 6244061..6244582 (+) 522 WP_046802916.1 single-stranded DNA-binding protein Machinery gene
  N3Z32_RS28105 (N3Z32_28125) - 6244695..6245594 (-) 900 WP_268080517.1 LysR family transcriptional regulator -
  N3Z32_RS28110 (N3Z32_28130) - 6245708..6246874 (+) 1167 WP_050448316.1 mandelate racemase/muconate lactonizing enzyme family protein -
  N3Z32_RS28115 (N3Z32_28135) - 6246993..6249200 (-) 2208 WP_268080518.1 TonB-dependent siderophore receptor -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18689.71 Da        Isoelectric Point: 5.9702

>NTDB_id=738752 N3Z32_RS28100 WP_046802916.1 6244061..6244582(+) (ssb) [Achromobacter sp. SS2-2022]
MASVNKVILVGNLGRDPEVRYSPEGAAICNMSIATTSTWKDKASGERREETEWHRVVMYNRLAEIAGEYLKKGRSVYIEG
RLKTRKWQDKDTGADRYSTEVVADQMQMLGGREDGGGGGASYGGGGGYDDAPSRPQQQRAPAQRPAPQQRPAPAAAPASS
GANLADMDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=738752 N3Z32_RS28100 WP_046802916.1 6244061..6244582(+) (ssb) [Achromobacter sp. SS2-2022]
ATGGCATCGGTTAACAAAGTCATACTCGTGGGCAATCTGGGTCGCGACCCGGAAGTCCGCTACAGCCCGGAAGGGGCTGC
AATCTGCAACATGTCCATCGCCACCACCTCCACCTGGAAGGACAAGGCATCGGGCGAGCGCCGCGAAGAAACCGAATGGC
ACCGCGTCGTCATGTACAACCGCCTGGCTGAAATCGCCGGCGAATACCTGAAGAAGGGCCGTTCGGTCTACATCGAAGGC
CGTCTGAAGACGCGCAAGTGGCAAGACAAGGACACCGGCGCTGACCGTTACAGCACCGAAGTGGTGGCTGACCAGATGCA
AATGCTGGGCGGCCGCGAAGACGGCGGTGGCGGCGGTGCCAGCTACGGTGGTGGCGGTGGCTACGACGACGCCCCGTCGC
GCCCGCAACAACAACGCGCCCCGGCGCAACGCCCGGCCCCGCAACAGCGCCCGGCGCCTGCAGCGGCCCCGGCCAGCAGC
GGTGCGAATTTGGCGGATATGGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6S7A5I3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.191

100

0.584
  ssb Neisseria meningitidis MC58

52.486

100

0.549
  ssb Neisseria gonorrhoeae MS11

52.571

100

0.532
  ssb Glaesserella parasuis strain SC1401

48.925

100

0.526